Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: Nucleotide-binding, alpha-beta plait

Term: IPR012677  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene8069 biogeco3 v1.0 203
• AutoFact: oligouridylate binding protein-like protein [Solanum tuberosum] 0.0
• Blast2go: rna-binding protein 0.0
unknown
biog3_v1.0_unigene8111 biogeco3 v1.0 557
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 5.99994e-41
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: glycine-rich rna-binding protein 0.0
Misassembled
biog3_v1.0_unigene8178 biogeco3 v1.0 871
• AutoFact: putative splicing factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 39-like 0.0
C-terminus
biog3_v1.0_unigene8304 biogeco3 v1.0 471
• AutoFact: Stachyose synthase, putative n=1 Tax=Ricinus communis RepID=B9SXA4_RICCO 0.0
• FL-Next: sp=Probable galactinol--sucrose galactosyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: alkaline alpha galactosidase i 0.0
Internal
biog3_v1.0_unigene8396 biogeco3 v1.0 943
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 0.0
Putative Complete
biog3_v1.0_unigene8452 biogeco3 v1.0 194
• AutoFact: RNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9T403_RICCO 0.0
• Blast2go: rna-binding protein 5 10 0.0
unknown
biog3_v1.0_unigene8467 biogeco3 v1.0 761
• AutoFact: 40S ribosomal protein S24 n=2 Tax=Picea sitchensis RepID=A9NKN3_PICSI 0.0
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
biog3_v1.0_unigene8544 biogeco3 v1.0 485
• AutoFact: HIV Tat-specific factor 1 [Arabidopsis thaliana] emb|CAC01867.1| putative protein [Arabidopsis thaliana] gb|AAY25436.1| At5g16260 [Arabidopsis thaliana] dbj|BAF01062.1| hypothetical protein [Arabidopsis thaliana] gb|AED92266.1| HIV Tat-specific factor 1 [ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: hiv tat-specific factor 1 homolog 0.0
N-terminus
biog3_v1.0_unigene8751 biogeco3 v1.0 849
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAD94469.1| putative RNA-binding protein [Arabidopsis thaliana] dbj|BAF01884.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AEC10093.1| RNA recognition motif-containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein with multiple splicing 0.0
C-terminus
biog3_v1.0_unigene8775 biogeco3 v1.0 1176
• AutoFact: putative RNA binding protein [Arabidopsis thaliana] 1.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: glycine-rich rna-binding protein 7 6.73043e-14
Complete
biog3_v1.0_unigene8902 biogeco3 v1.0 402
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein with multiple splicing 0.0
Putative N-terminus
biog3_v1.0_unigene8977 biogeco3 v1.0 2770
• AutoFact: putative galactinol--sucrose galactosyltransferase 6 [Arabidopsis thaliana] gb|AAL90901.1| AT5g20250/F5O24_140 [Arabidopsis thaliana] gb|AAN18198.1| At5g20250/F5O24_140 [Arabidopsis thaliana] dbj|BAE99252.1| seed imbitition protein-like [Arabidopsis thali 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: galactinol--sucrose galactosyltransferase 6 0.0
Complete
biog3_v1.0_unigene9103 biogeco3 v1.0 632
• AutoFact: PWWP domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L3U3_ARALL 2.94273e-44
• FL-Next: sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: pwwp domain-containing protein 0.0
Internal
biog3_v1.0_unigene9160 biogeco3 v1.0 720
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAB09337.1| unnamed protein product [Arabidopsis thaliana] gb|AAL59923.1| unknown protein [Arabidopsis thaliana] gb|AAM20239.1| unknown protein [Arabidopsis thaliana] gb|AAM62467.1| unkno 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
C-terminus
biog3_v1.0_unigene9233 biogeco3 v1.0 287
• AutoFact: homeodomain-leucine zipper protein 56 [Glycine max] 8.00001e-41
• Blast2go: homeobox-leucine zipper protein athb-6-like 0.0
unknown
biog3_v1.0_unigene9234 biogeco3 v1.0 941
• AutoFact: putative receptor protein kinase [Arabidopsis thaliana] gb|ACN59306.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb|AEC09344.1| putative receptor protein kinase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene9296 biogeco3 v1.0 287
• AutoFact: tobacco nucleolin [Nicotiana tabacum] 5.60519e-45
• Blast2go: rna-binding protein 0.0
Putative coding
biog3_v1.0_unigene9356 biogeco3 v1.0 695
• AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB10647.1| unnamed protein product [Arabidopsis thaliana] gb|AAL32982.1| AT5g60980/MSL3_100 [Arabidopsis thaliana] gb|AAO23575.1| At5g60980/MSL3_100 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
C-terminus
biog3_v1.0_unigene9363 biogeco3 v1.0 1002
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AED98140.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear 0.0
Putative Complete
biog3_v1.0_unigene9519 biogeco3 v1.0 695
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 5.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain