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Assembly Name: biogeco3 v1.0

Name: Winged helix-turn-helix transcription repressor DNA-binding

Term: IPR011991  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene101 biogeco3 v1.0 632
AutoFact: DNA-binding protein PcMYB1, putative [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: telomere repeat binding factor 1 0.0
Putative N-terminus
biog3_v1.0_unigene572 biogeco3 v1.0 2370
AutoFact: putative Eukaryotic translation initiation factor 3 subunit 8 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog3_v1.0_unigene784 biogeco3 v1.0 905
AutoFact: Os01g0570500 protein n=3 Tax=Oryza sativa RepID=Q656Y0_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene879 biogeco3 v1.0 406
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9S0U6_RICCO 0.0
FL-Next: tr=JHL20J20.1 protein; Jatropha curcas. 0.0
Internal
biog3_v1.0_unigene904 biogeco3 v1.0 336
AutoFact: phototropic-responsive NPH3-like protein [Arabidopsis thaliana] ref|NP_974103.1| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] ref|NP_001185347.1| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] sp|Q9C9V6.1|Y1790_ARATH Re 0.0
FL-Next: sp=BTB/POZ domain-containing protein NPY1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: phototropic-responsive nph3-like protein 0.0
Putative C-terminus
biog3_v1.0_unigene952 biogeco3 v1.0 839
AutoFact: COP9 signalosome complex subunit 4 [Arabidopsis thaliana] sp|Q8L5U0.2|CSN4_ARATH RecName: Full=COP9 signalosome complex subunit 4; Short=AtS4; Short=Signalosome subunit 4; AltName: Full=Constitutive photomorphogenesis protein 8; AltName: Full=Protein FUSC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cop9 signalosome complex subunit 4 0.0
C-terminus
biog3_v1.0_unigene1031 biogeco3 v1.0 1617
AutoFact: predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=UPI0001621F83 0.0
FL-Next: sp=DNA topoisomerase 6 subunit A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna topoisomerase 6 subunit a-like 0.0
Complete
biog3_v1.0_unigene1110 biogeco3 v1.0 309
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9S0U6_RICCO 0.0
Coding
biog3_v1.0_unigene1236 biogeco3 v1.0 740
AutoFact: transcription factor (E2F) [Chenopodium rubrum] 0.0
FL-Next: Isoform 2 of Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB 0.0
Blast2go: transcription factor e2f 0.0
Putative N-terminus
biog3_v1.0_unigene1307 biogeco3 v1.0 669
AutoFact: heat shock factor protein hsf8-related [Glycine max] 0.0
FL-Next: sp=Heat stress transcription factor A-4b; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: heat shock transcription factor 1 0.0
Internal
biog3_v1.0_unigene1447 biogeco3 v1.0 433
AutoFact: winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana] gb|AAM10313.1| AT5g66100/K2A18_18 [Arabidopsis thaliana] gb|AAN31109.1| At5g66100/K2A18_18 [Arabidopsis thaliana] gb|AED98159.1| winged-helix DNA-binding transcription fac 5.0e-19
Blast2go: lupus la 9.83978e-38
Putative coding
biog3_v1.0_unigene1461 biogeco3 v1.0 646
AutoFact: putative transcription initiation factor [Oryza sativa Japonica Group] gb|ABB46979.1| mutant TFIIF-alpha, putative, expressed [Oryza sativa Japonica Group] 2.0e-32
FL-Next: Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 0.0
Blast2go: transcription initiation factor iif subunit alpha 7.42688e-44
C-terminus
biog3_v1.0_unigene1558 biogeco3 v1.0 416
AutoFact: cullin 3B [Arabidopsis thaliana] sp|Q9C9L0.1|CUL3B_ARATH RecName: Full=Cullin-3B; Short=AtCUL3b gb|AAG52544.1|AC013289_11 putative cullin; 66460-68733 [Arabidopsis thaliana] gb|AEE34961.1| cullin 3B [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene2101 biogeco3 v1.0 238
AutoFact: uncharacterized protein [Arabidopsis thaliana] ref|NP_974613.1| uncharacterized protein [Arabidopsis thaliana] emb|CAB36745.1| putative protein [Arabidopsis thaliana] emb|CAB79412.1| putative protein [Arabidopsis thaliana] gb|AAM62860.1| unknown [Arabidop 0.0
Blast2go: uncharacterized protein 0.0
Putative coding
biog3_v1.0_unigene2149 biogeco3 v1.0 439
AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: la protein 1 0.0
Internal
biog3_v1.0_unigene2256 biogeco3 v1.0 647
AutoFact: Heat stress transcription factor B-2b n=3 Tax=Oryza sativa RepID=HFB2B_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heat shock factor protein 7 0.0
Putative N-terminus
biog3_v1.0_unigene2752 biogeco3 v1.0 970
AutoFact: Glutaredoxin-related-like protein n=3 Tax=Oryza sativa RepID=Q67UI1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: vacuolar membrane-associated protein iml1 0.0
Putative Complete
biog3_v1.0_unigene2753 biogeco3 v1.0 424
AutoFact: cullin 3 [Arabidopsis thaliana] sp|Q9ZVH4.1|CUL3A_ARATH RecName: Full=Cullin-3A; Short=AtCUL3a gb|AAF87034.1|AC006535_12 T24P13.25 [Arabidopsis thaliana] gb|AAD14503.1| Highly similar to cullin 3 [Arabidopsis thaliana] emb|CAC87120.1| cullin 3a [Arabidops 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene2809 biogeco3 v1.0 420
AutoFact: Heat shock transcription factor (HSF) [Glycine max] 1.4013e-45
Blast2go: heat stress transcription factor b-4-like 0.0
Putative coding
biog3_v1.0_unigene2852 biogeco3 v1.0 331
AutoFact: cullin 1C [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain