Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: poly(A)+ mRNA export from nucleus

Term: GO:0016973  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene5742 biogeco3 v1.0 849
• AutoFact: uncharacterized protein [Arabidopsis thaliana] gb|AAK55696.1|AF378893_1 AT5g02770/F9G14_80 [Arabidopsis thaliana] emb|CAB86031.1| putative protein [Arabidopsis thaliana] gb|AAK91488.1| AT5g02770/F9G14_80 [Arabidopsis thaliana] dbj|BAD95440.1| putative pro 4.0e-09
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: protein 2.05244e-12
Complete
biog3_v1.0_unigene5815 biogeco3 v1.0 1495
• AutoFact: DUF2074 domain containing protein 5.0e-05
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: protein 2.81442e-18
Putative Complete
biog3_v1.0_unigene7712 biogeco3 v1.0 306
• AutoFact: DEAD-box ATP-dependent RNA helicase 38 [Arabidopsis thaliana] sp|Q93ZG7.2|RH38_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 38; AltName: Full=Low expression of osmotically-responsive genes 4 protein; AltName: Full=Protein CRYOPHYTE emb|CAB64214 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 38-like 0.0
C-terminus
biog3_v1.0_unigene7800 biogeco3 v1.0 367
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 0.0
• FL-Next: sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nucleoprotein tpr 0.0
Internal
biog3_v1.0_unigene7856 biogeco3 v1.0 319
• AutoFact: Nucleoporin GLE1, putative n=1 Tax=Ricinus communis RepID=B9RMT7_RICCO 2.0e-16
• FL-Next: tr=Nucleoporin GLE1, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: gle1l protein 3.50236e-16
Internal
biog3_v1.0_unigene10696 biogeco3 v1.0 1179
• AutoFact: DEAD-box ATP-dependent RNA helicase 38 [Arabidopsis thaliana] sp|Q93ZG7.2|RH38_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 38; AltName: Full=Low expression of osmotically-responsive genes 4 protein; AltName: Full=Protein CRYOPHYTE emb|CAB64214 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 38-like 0.0
Internal
biog3_v1.0_unigene14979 biogeco3 v1.0 251
• AutoFact: uncharacterized protein [Arabidopsis thaliana] gb|AAK55696.1|AF378893_1 AT5g02770/F9G14_80 [Arabidopsis thaliana] emb|CAB86031.1| putative protein [Arabidopsis thaliana] gb|AAK91488.1| AT5g02770/F9G14_80 [Arabidopsis thaliana] dbj|BAD95440.1| putative pro 4.0e-09
• Blast2go: protein 2.05244e-12
unknown
biog3_v1.0_unigene15521 biogeco3 v1.0 248
• AutoFact: DUF2074 domain containing protein 5.0e-05
• Blast2go: protein 2.81442e-18
unknown
biog3_v1.0_unigene15526 biogeco3 v1.0 139
• AutoFact: DEAD-box ATP-dependent RNA helicase 38 [Arabidopsis thaliana] sp|Q93ZG7.2|RH38_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 38; AltName: Full=Low expression of osmotically-responsive genes 4 protein; AltName: Full=Protein CRYOPHYTE emb|CAB64214 0.0
• Blast2go: dead-box atp-dependent rna helicase 38-like 0.0
unknown
biog3_v1.0_unigene15738 biogeco3 v1.0 461
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 5.99994e-41
• FL-Next: sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nucleoprotein tpr 0.0
Internal
biog3_v1.0_unigene17246 biogeco3 v1.0 257
• AutoFact: proteasome-like protein [Arabidopsis thaliana] dbj|BAC43481.1| unknown protein [Arabidopsis thaliana] gb|AEC06895.1| proteasome-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene18206 biogeco3 v1.0 96
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 0.0
• Blast2go: nucleoprotein tpr 0.0
unknown
biog3_v1.0_unigene19871 biogeco3 v1.0 239
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 0.0
• FL-Next: sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nucleoprotein tpr 0.0
Internal
biog3_v1.0_unigene19874 biogeco3 v1.0 218
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 2.0e-19
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: nucleoprotein tpr 7.22623e-32
N-terminus
biog3_v1.0_unigene20463 biogeco3 v1.0 265
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 0.0
• FL-Next: sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nucleoprotein tpr 0.0
Internal
biog3_v1.0_unigene22213 biogeco3 v1.0 295
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 1.0e-10
• FL-Next: sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nucleoprotein tpr 4.30886e-18
Internal
biog3_v1.0_unigene22790 biogeco3 v1.0 314
• AutoFact: nucleoprotein TPR [Arabidopsis thaliana] sp|A4GSN8.1|NUA_ARATH RecName: Full=Nuclear-pore anchor; AltName: Full=Protein TRANSLOCATED PROMOTER REGION; Short=AtTPR gb|ABO21684.1| nuclear-pore anchor [Arabidopsis thaliana] gb|AEE36226.1| nucleoprotein TPR [A 2.0e-15
• FL-Next: sp=Nuclear-pore anchor; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nucleoprotein tpr 2.59187e-17
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain