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Assembly Name: biogeco3 v1.0

Name: production of lsiRNA involved in RNA interference

Term: GO:0010599  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene3832 biogeco3 v1.0 280
• AutoFact: RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dicer-like protein 4 0.0
Internal
biog3_v1.0_unigene5276 biogeco3 v1.0 690
• AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9S921_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein argonaute 7-like 0.0
N-terminus
biog3_v1.0_unigene5290 biogeco3 v1.0 466
• AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=2 Tax=Physcomitrella patens RepID=A9RV91_PHYPA 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: endoribonuclease dicer 0.0
Putative C-terminus
biog3_v1.0_unigene15117 biogeco3 v1.0 181
• AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=2 Tax=Physcomitrella patens RepID=A9RV91_PHYPA 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: endoribonuclease dicer 0.0
Internal
biog3_v1.0_unigene16812 biogeco3 v1.0 298
• AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9S921_RICCO 0.0
• Blast2go: protein argonaute 7-like 0.0
unknown
biog3_v1.0_unigene19025 biogeco3 v1.0 154
• AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=2 Tax=Physcomitrella patens RepID=A9RV91_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: endoribonuclease dicer 0.0
Internal
biog3_v1.0_unigene19742 biogeco3 v1.0 257
• AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9S921_RICCO 0.0
• Blast2go: protein argonaute 7-like 0.0
Coding
biog3_v1.0_unigene21170 biogeco3 v1.0 244
• AutoFact: Argonaute protein group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HXP0_POPTR 4.0e-25
• FL-Next: sp=Protein argonaute 7; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: protein argonaute 7-like 3.59372e-30
Internal
biog3_v1.0_unigene21261 biogeco3 v1.0 428
• AutoFact: CAF protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: endoribonuclease dicer 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain