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Assembly Name: biogeco3 v1.0

Name: DNA-directed RNA polymerase II, core complex

Term: GO:0005665  Help

Source: GO from Blast2go

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene1328 biogeco3 v1.0 458
• AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 3.9937e-43
• FL-Next: sp=DNA-directed RNA polymerase; Blastocystis hominis. 0.0
• Blast2go: dna-directed rna polymerase 0.0
Internal
biog3_v1.0_unigene1870 biogeco3 v1.0 976
• AutoFact: DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana] gb|AAK48978.1|AF370551_1 RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5 [Arabidopsis thaliana] gb|AAC28253.1| RNA polymerase I 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerases and iii subunit rpabc1 0.0
Complete
biog3_v1.0_unigene4281 biogeco3 v1.0 552
• AutoFact: RNA polymerase n=1 Tax=Elaeis guineensis RepID=B3TLS5_ELAGV 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerases and iii kda polypeptide 0.0
C-terminus
biog3_v1.0_unigene6495 biogeco3 v1.0 547
• AutoFact: 15.9 kDa subunit of RNA polymerase II n=8 Tax=core eudicotyledons RepID=O48890_ARATH 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb4 0.0
Putative Complete
biog3_v1.0_unigene8175 biogeco3 v1.0 455
• AutoFact: DNA-directed RNA Polymerase II subunit K [Arabidopsis thaliana] dbj|BAB09703.1| unnamed protein product [Arabidopsis thaliana] gb|AAK76628.1| unknown protein [Arabidopsis thaliana] gb|AAL85038.1| unknown protein [Arabidopsis thaliana] gb|AAM67289.1| DNA d 6.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerases and iii kda polypeptide 2.78956e-31
Complete
biog3_v1.0_unigene9964 biogeco3 v1.0 374
• AutoFact: DNA-directed RNA polymerase subunit n=2 Tax=Papilionoideae RepID=Q2HU21_MEDTR 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit; Vitis vinifera (Grape). 0.0
• Blast2go: dna-directed rna polymerase ii kda polypeptide 0.0
Putative Complete
biog3_v1.0_unigene10152 biogeco3 v1.0 534
• AutoFact: RNA polymerase, dimerisation [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerase third largest subunit 0.0
Internal
biog3_v1.0_unigene11290 biogeco3 v1.0 645
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
C-terminus
biog3_v1.0_unigene13198 biogeco3 v1.0 416
• AutoFact: DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana] gb|AAK48978.1|AF370551_1 RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5 [Arabidopsis thaliana] gb|AAC28253.1| RNA polymerase I 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene14469 biogeco3 v1.0 228
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
unknown
biog3_v1.0_unigene14865 biogeco3 v1.0 181
• AutoFact: 15.9 kDa subunit of RNA polymerase II n=8 Tax=core eudicotyledons RepID=O48890_ARATH 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb4 0.0
unknown
biog3_v1.0_unigene15014 biogeco3 v1.0 176
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
N-terminus
biog3_v1.0_unigene19681 biogeco3 v1.0 205
• AutoFact: DNA-directed RNA Polymerase II subunit K [Arabidopsis thaliana] dbj|BAB09703.1| unnamed protein product [Arabidopsis thaliana] gb|AAK76628.1| unknown protein [Arabidopsis thaliana] gb|AAL85038.1| unknown protein [Arabidopsis thaliana] gb|AAM67289.1| DNA d 4.0e-18
• Blast2go: dna-directed rna polymerases and iii kda polypeptide 4.34381e-30
unknown
biog3_v1.0_unigene19728 biogeco3 v1.0 185
• AutoFact: DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative [Musa balbisiana] 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerase ii kda polypeptide 4.62428e-44
C-terminus
biog3_v1.0_unigene20762 biogeco3 v1.0 330
• AutoFact: DNA-directed RNA polymerase subunit n=2 Tax=Papilionoideae RepID=Q2HU21_MEDTR 0.0
• Blast2go: dna-directed rna polymerase ii kda polypeptide 0.0
unknown
biog3_v1.0_unigene21425 biogeco3 v1.0 213
• AutoFact: RNA polymerase n=1 Tax=Elaeis guineensis RepID=B3TLS5_ELAGV 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerases and iii kda polypeptide 0.0
N-terminus
biog3_v1.0_unigene21648 biogeco3 v1.0 417
• AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 3.9937e-43
• Blast2go: dna-directed rna polymerase 0.0
Coding
biog3_v1.0_unigene22910 biogeco3 v1.0 381
• AutoFact: DNA-directed RNA polymerase II subunit J n=4 Tax=Poaceae RepID=B4FJS1_MAIZE 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene23901 biogeco3 v1.0 141
• AutoFact: 15.9 kDa subunit of RNA polymerase II n=8 Tax=core eudicotyledons RepID=O48890_ARATH 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb4 0.0
unknown
biog3_v1.0_unigene24871 biogeco3 v1.0 134
• AutoFact: DNA-directed RNA Polymerase II subunit K [Arabidopsis thaliana] dbj|BAB09703.1| unnamed protein product [Arabidopsis thaliana] gb|AAK76628.1| unknown protein [Arabidopsis thaliana] gb|AAL85038.1| unknown protein [Arabidopsis thaliana] gb|AAM67289.1| DNA d 6.0e-19
• Blast2go: dna-directed rna polymerases and iii kda polypeptide 2.78956e-31
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain