Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: regulation of transcription from RNA polymerase II promoter

Term: GO:0006357  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene265 biogeco3 v1.0 588
• AutoFact: Hydroxyproline-rich glycoprotein family protein n=3 Tax=Arabidopsis RepID=Q9LZ00_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: hydroxyproline-rich glycoprotein family protein 0.0
Internal
biog3_v1.0_unigene944 biogeco3 v1.0 620
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: rna polymerase ii transcription mediator 7.42688e-44
N-terminus
biog3_v1.0_unigene5185 biogeco3 v1.0 489
• AutoFact: tRNA/rRNA methyltransferase (SpoU) family protein n=3 Tax=Arabidopsis RepID=F4JP86_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: trna rrna methyltransferase family protein 0.0
Internal
biog3_v1.0_unigene14389 biogeco3 v1.0 390
• AutoFact: RNA polymerase II mediator complex subunit, putative n=1 Tax=Ricinus communis RepID=B9RQ93_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna polymerase transcriptional regulation mediator-like protein 0.0
N-terminus
biog3_v1.0_unigene15611 biogeco3 v1.0 357
• AutoFact: transcription co-activator-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: mediator subunit med7 0.0
Putative C-terminus
biog3_v1.0_unigene15856 biogeco3 v1.0 195
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uncharacterized protein 0.0
Internal
biog3_v1.0_unigene16516 biogeco3 v1.0 188
• AutoFact: Mediator complex, subunit Med10 [Arabidopsis thaliana] gb|AAK49628.1|AF372912_1 At1g26660/T24P13_4 [Arabidopsis thaliana] gb|AAL15363.1| At1g26660/T24P13_4 [Arabidopsis thaliana] gb|AEE30718.1| Mediator complex, subunit Med10 [Arabidopsis thaliana] 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: mediator subunit med10 0.0
C-terminus
biog3_v1.0_unigene16722 biogeco3 v1.0 196
• AutoFact: Mediator complex, subunit Med10 [Arabidopsis thaliana] gb|AAK49628.1|AF372912_1 At1g26660/T24P13_4 [Arabidopsis thaliana] gb|AAL15363.1| At1g26660/T24P13_4 [Arabidopsis thaliana] gb|AEE30718.1| Mediator complex, subunit Med10 [Arabidopsis thaliana] 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: mediator subunit med10 0.0
Putative N-terminus
biog3_v1.0_unigene21889 biogeco3 v1.0 302
• AutoFact: elongator complex protein 4 [Arabidopsis thaliana] gb|AAG50962.1|AC073395_4 hypothetical protein; 53156-50996 [Arabidopsis thaliana] gb|AEE75015.1| elongator complex protein 4 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: elongator complex protein 4 0.0
Putative C-terminus
biog3_v1.0_unigene22516 biogeco3 v1.0 239
• AutoFact: RNA polymerase II transcription mediator [Arabidopsis thaliana] gb|AAF04900.1|AC011437_15 hypothetical protein [Arabidopsis thaliana] gb|AAM09647.1|AF466359_1 SWP1 [Arabidopsis thaliana] emb|CAD53582.1| struwwelpeter 1 protein [Arabidopsis thaliana] gb|AE 0.0
• Blast2go: rna polymerase ii transcription mediator 0.0
unknown
biog3_v1.0_unigene23688 biogeco3 v1.0 290
• AutoFact: Unassigned protein
• Blast2go: uncharacterized protein 0.0
unknown
biog3_v1.0_unigene24454 biogeco3 v1.0 303
• AutoFact: TATA-binding related factor (TRF) of subunit 20 of Mediator complex [Arabidopsis thaliana] gb|AAR20747.1| At2g28230 [Arabidopsis thaliana] gb|AAR24748.1| At2g28230 [Arabidopsis thaliana] gb|AEC08093.1| TATA-binding related factor (TRF) of subunit 20 of Me 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: tata-binding related factor of subunit 20 of mediator complex 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain