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Assembly Name: biogeco3 v1.0

Name: nuclear speck

Term: GO:0016607  Help

Source: GO from Blast2go

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene2 biogeco3 v1.0 574
• AutoFact: elongation factor like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u5 small nuclear ribonucleoprotein component 0.0
Putative C-terminus
biog3_v1.0_unigene90 biogeco3 v1.0 567
• AutoFact: RecName: Full=Putative N6-adenosine-methyltransferase MT-A70-like gb|ABD28511.1| MT-A70 [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: n6-adenosine-methyltransferase mt-a70-like protein 0.0
Internal
biog3_v1.0_unigene1608 biogeco3 v1.0 458
• AutoFact: U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] ref|NP_849600.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] gb|AAF80219.1|AC025290_8 Contains similarity to an U5 snRNP-specific protein 116 kD from Homo sapiens 0.0
• FL-Next: sp=Elongation factor 2; Blastocystis hominis. 0.0
• Blast2go: u5 small nuclear ribonucleoprotein component 0.0
Internal
biog3_v1.0_unigene3022 biogeco3 v1.0 304
• AutoFact: U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] ref|NP_849600.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] gb|AAF80219.1|AC025290_8 Contains similarity to an U5 snRNP-specific protein 116 kD from Homo sapiens 0.0
• Blast2go: u5 small nuclear ribonucleoprotein component 0.0
unknown
biog3_v1.0_unigene3213 biogeco3 v1.0 818
• AutoFact: putative arginine/serine-rich protein [Arabidopsis thaliana] 9.99967e-42
• Blast2go: protein arginine serine-rich 45 0.0
Coding
biog3_v1.0_unigene3317 biogeco3 v1.0 705
• AutoFact: splicing factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp31-like 0.0
Complete
biog3_v1.0_unigene4186 biogeco3 v1.0 530
• AutoFact: U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] ref|NP_849600.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] gb|AAF80219.1|AC025290_8 Contains similarity to an U5 snRNP-specific protein 116 kD from Homo sapiens 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: u5 small nuclear ribonucleoprotein component 0.0
N-terminus
biog3_v1.0_unigene4816 biogeco3 v1.0 2317
• AutoFact: Isoform 2 of Serine/threonine-protein phosphatase 5 n=1 Tax=Solanum lycopersicum RepID=Q84K11-2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: serine threonine-protein phosphatase 5 0.0
Complete
biog3_v1.0_unigene6834 biogeco3 v1.0 1110
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp41 0.0
N-terminus
biog3_v1.0_unigene7144 biogeco3 v1.0 541
• AutoFact: Arsenite-resistance protein, putative n=1 Tax=Ricinus communis RepID=B9S6M6_RICCO 0.0
• FL-Next: sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: serrate rna effector molecule-like 0.0
C-terminus
biog3_v1.0_unigene7763 biogeco3 v1.0 548
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SEX4_RICCO 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: light-regulated zinc finger protein 1 0.0
C-terminus
biog3_v1.0_unigene9898 biogeco3 v1.0 417
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SEX4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: light-regulated zinc finger protein 1 0.0
N-terminus
biog3_v1.0_unigene10308 biogeco3 v1.0 374
• AutoFact: Arsenite-resistance protein, putative n=1 Tax=Ricinus communis RepID=B9S6M6_RICCO 0.0
• Blast2go: serrate rna effector molecule-like 0.0
Putative coding
biog3_v1.0_unigene11117 biogeco3 v1.0 501
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp40 0.0
Internal
biog3_v1.0_unigene11763 biogeco3 v1.0 337
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp41 0.0
C-terminus
biog3_v1.0_unigene13135 biogeco3 v1.0 692
• AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pre-mrna-splicing factor sf2 0.0
Putative C-terminus
biog3_v1.0_unigene13416 biogeco3 v1.0 599
• AutoFact: RecName: Full=Putative N6-adenosine-methyltransferase MT-A70-like gb|ABD28511.1| MT-A70 [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: n6-adenosine-methyltransferase mt-a70-like protein 0.0
Internal
biog3_v1.0_unigene13540 biogeco3 v1.0 334
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• Blast2go: arginine serine-rich-splicing factor rsp40 0.0
unknown
biog3_v1.0_unigene14610 biogeco3 v1.0 259
• AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pre-mrna-splicing factor sf2 0.0
N-terminus
biog3_v1.0_unigene15139 biogeco3 v1.0 447
• AutoFact: putative arginine/serine-rich protein [Arabidopsis thaliana] 9.99967e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein arginine serine-rich 45 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain