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Assembly Name: biogeco3 v1.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene120 biogeco3 v1.0 273
AutoFact: Peptidyl-tRNA hydrolase [Arabidopsis thaliana] sp|Q6NLS8.1|PTHM_ARATH RecName: Full=Peptidyl-tRNA hydrolase, mitochondrial; AltName: Full=M-PTH; AltName: Full=Mitochondrial CRS2-like protein; AltName: Full=Mitochondrial RNA splicing factor; Flags: Precurs 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: peptidyl-trna mitochondrial-like 0.0
C-terminus
biog3_v1.0_unigene993 biogeco3 v1.0 512
AutoFact: Peptidyl-tRNA hydrolase [Arabidopsis thaliana] sp|Q6NLS8.1|PTHM_ARATH RecName: Full=Peptidyl-tRNA hydrolase, mitochondrial; AltName: Full=M-PTH; AltName: Full=Mitochondrial CRS2-like protein; AltName: Full=Mitochondrial RNA splicing factor; Flags: Precurs 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chloroplastic group iib intron splicing facilitator crs2-b 0.0
C-terminus
biog3_v1.0_unigene1876 biogeco3 v1.0 542
AutoFact: arabinose kinase [Arabidopsis thaliana] sp|O23461.1|ARAK_ARATH RecName: Full=L-arabinokinase; Short=AtISA1 emb|CAB10392.1| galactokinase like protein [Arabidopsis thaliana] emb|CAB78655.1| galactokinase like protein [Arabidopsis thaliana] gb|AEE83696.1| a 0.0
FL-Next: sp=L-arabinokinase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: galactokinase like protein 0.0
Internal
biog3_v1.0_unigene2007 biogeco3 v1.0 302
AutoFact: Polyribonucleotide phophorylase (Fragment) n=1 Tax=Spinacia oleracea RepID=Q41370_SPIOL 2.0e-30
FL-Next: tr=Putative uncharacterized protein Sb02g003900; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: polyribonucleotide nucleotidyltransferase 9.65427e-38
Internal
biog3_v1.0_unigene2573 biogeco3 v1.0 442
AutoFact: Exosome complex exonuclease rrp45, putative n=1 Tax=Ricinus communis RepID=B9SYQ9_RICCO 0.0
Blast2go: 3 -5 -exoribonuclease cer7 protein 0.0
unknown
biog3_v1.0_unigene3426 biogeco3 v1.0 1544
AutoFact: RNA 3'-terminal phosphate cyclase-like protein [Arabidopsis thaliana] sp|Q9C578.1|RCL1_ARATH RecName: Full=Probable RNA 3'-terminal phosphate cyclase-like protein emb|CAC34503.1| RNA 3'-terminal phosphate cyclase-like protein [Arabidopsis thaliana] gb|AAN 0.0
FL-Next: sp=Probable RNA 3'-terminal phosphate cyclase-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Complete
biog3_v1.0_unigene4365 biogeco3 v1.0 1335
AutoFact: ribosomal protein L1p/L10e family protein [Arabidopsis thaliana] emb|CAB88283.1| putative protein [Arabidopsis thaliana] gb|AAL49900.1| unknown protein [Arabidopsis thaliana] gb|AEE79812.1| ribosomal protein L1p/L10e family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
biog3_v1.0_unigene4545 biogeco3 v1.0 463
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNU3_RICCO 0.0
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene4898 biogeco3 v1.0 300
AutoFact: Peptidyl-tRNA hydrolase [Arabidopsis thaliana] sp|Q6NLS8.1|PTHM_ARATH RecName: Full=Peptidyl-tRNA hydrolase, mitochondrial; AltName: Full=M-PTH; AltName: Full=Mitochondrial CRS2-like protein; AltName: Full=Mitochondrial RNA splicing factor; Flags: Precurs 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chloroplastic group iib intron splicing facilitator crs2-b 0.0
Internal
biog3_v1.0_unigene5185 biogeco3 v1.0 489
AutoFact: tRNA/rRNA methyltransferase (SpoU) family protein n=3 Tax=Arabidopsis RepID=F4JP86_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: trna rrna methyltransferase family protein 0.0
Internal
biog3_v1.0_unigene5616 biogeco3 v1.0 691
AutoFact: 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] ref|NP_850537.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana] dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex exonuclease rrp42 0.0
C-terminus
biog3_v1.0_unigene6803 biogeco3 v1.0 348
AutoFact: Exosome complex exonuclease rrp43, putative n=1 Tax=Ricinus communis RepID=B9T1F1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex component rrp43-like 0.0
Internal
biog3_v1.0_unigene8351 biogeco3 v1.0 293
AutoFact: Polynucleotide phosphorylase n=1 Tax=Pisum sativum RepID=O24288_PEA 0.0
FL-Next: tr=Polynucleotide phosphorylase; Pisum sativum (Garden pea). 0.0
Blast2go: polynucleotide phosphorylase 0.0
Internal
biog3_v1.0_unigene8391 biogeco3 v1.0 1880
AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
biog3_v1.0_unigene8554 biogeco3 v1.0 279
AutoFact: Exosome complex exonuclease rrp43, putative n=1 Tax=Ricinus communis RepID=B9T1F1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex component rrp43-like 0.0
N-terminus
biog3_v1.0_unigene8573 biogeco3 v1.0 367
AutoFact: 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] ref|NP_850537.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana] dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: exosome complex exonuclease rrp42 0.0
N-terminus
biog3_v1.0_unigene10148 biogeco3 v1.0 294
AutoFact: tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] gb|AEE30912.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] 9.99967e-42
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: trna nucleotidyltransferase (cca-adding enzyme) 0.0
Internal
biog3_v1.0_unigene10228 biogeco3 v1.0 204
AutoFact: adenosine-deaminase family/editase family protein [Arabidopsis thaliana] 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: adenosine trna-specific 1 2.67521e-28
Internal
biog3_v1.0_unigene10239 biogeco3 v1.0 572
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 1.99762e-36
N-terminus
biog3_v1.0_unigene10400 biogeco3 v1.0 412
AutoFact: heterogeneous nuclear ribonucleoprotein R [Gallus gallus] ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Meleagris gallopavo] 4.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein r 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain