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Assembly Name: biogeco3 v1.0

Name: RNA metabolic process

Term: GO:0016070  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene534 biogeco3 v1.0 2125
AutoFact: eukaryotic translation initiation factor 5 [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 5 0.0
Complete
biog3_v1.0_unigene2571 biogeco3 v1.0 308
AutoFact: Eukaryotic translation initiation factor 4G n=2 Tax=Carica papaya RepID=E3V0H9_CARPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: translation initiation factor eif-4f 0.0
Internal
biog3_v1.0_unigene3548 biogeco3 v1.0 304
AutoFact: Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 [Medicago truncatula] 0.0
Blast2go: regulator of nonsense transcripts 2-like 0.0
Coding
biog3_v1.0_unigene6111 biogeco3 v1.0 746
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin fusion protein 0.0
Complete
biog3_v1.0_unigene7189 biogeco3 v1.0 562
AutoFact: translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gb|AAC12836.1| putative translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gb|AAM98194.1| putative translation initiation factor eIF-2B epsilon subunit [A 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: translation initiation factor eif-2b epsilon subunit 0.0
Internal
biog3_v1.0_unigene7940 biogeco3 v1.0 394
AutoFact: metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] gb|AAK63855.1|AF389282_1 AT5g40270/MSN9_170 [Arabidopsis thaliana] dbj|BAB10908.1| unnamed protein product [Arabidopsis thaliana] gb|AAM26721.1| AT5g40270/MSN9_170 [Arabi 0.0
FL-Next: tr=Putative metal-dependent phosphohydrolase; Phaseolus vulgaris (Kidney bean) (French bean). 0.0
Blast2go: metal-dependent phosphohydrolase hd domain-containing protein 0.0
Internal
biog3_v1.0_unigene9164 biogeco3 v1.0 298
AutoFact: translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gb|AAC12836.1| putative translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gb|AAM98194.1| putative translation initiation factor eIF-2B epsilon subunit [A 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: translation initiation factor eif-2b epsilon subunit 0.0
Internal
biog3_v1.0_unigene9245 biogeco3 v1.0 486
AutoFact: Ribonuclease n=1 Tax=Picea sitchensis RepID=D5AEE7_PICSI 0.0
FL-Next: sp=Ribonuclease; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribonuclease h2 subunit a 0.0
Internal
biog3_v1.0_unigene9460 biogeco3 v1.0 399
AutoFact: Eukaryotic translation initiation factor 4G n=2 Tax=Carica papaya RepID=E3V0H9_CARPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: translation initiation factor eif-4f 0.0
Internal
biog3_v1.0_unigene9673 biogeco3 v1.0 550
AutoFact: Os12g0256300 protein n=6 Tax=Oryza sativa RepID=Q2QUQ9_ORYSJ 0.0
FL-Next: tr=Os11g0151600 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: pre-mrna-splicing factor cwc-22 0.0
Internal
biog3_v1.0_unigene11054 biogeco3 v1.0 674
AutoFact: RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana] gb|AAC67203.2| expressed protein [Arabidopsis thaliana] gb|AAO64196.1| putative DEAD/DEAH box RNA helicase (HUA ENHANCER2) [Arabidopsis thaliana] gb|AEC06028.1| RNA helicase, ATP-depend 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hua enhancer 2 0.0
C-terminus
biog3_v1.0_unigene11764 biogeco3 v1.0 483
AutoFact: SRI domain containing protein 2.0e-05
Blast2go: zinc finger ccch domain-containing protein 0.0
Coding
biog3_v1.0_unigene13594 biogeco3 v1.0 544
AutoFact: Os12g0256300 protein n=6 Tax=Oryza sativa RepID=Q2QUQ9_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: pre-mrna-splicing factor cwc-22 0.0
Internal
biog3_v1.0_unigene14551 biogeco3 v1.0 157
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
Blast2go: ubiquitin a-52 residue ribosomal protein fusion product 1 0.0
unknown
biog3_v1.0_unigene15010 biogeco3 v1.0 308
AutoFact: translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gb|AAC12836.1| putative translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gb|AAM98194.1| putative translation initiation factor eIF-2B epsilon subunit [A 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: translation initiation factor eif-2b epsilon subunit 0.0
Internal
biog3_v1.0_unigene16142 biogeco3 v1.0 135
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
Blast2go: ubiquitin a-52 residue ribosomal protein fusion product 1 0.0
unknown
biog3_v1.0_unigene16229 biogeco3 v1.0 239
AutoFact: SRI domain containing protein 2.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 0.0
Internal
biog3_v1.0_unigene17890 biogeco3 v1.0 239
AutoFact: Helicase, putative n=1 Tax=Ricinus communis RepID=B9SZG8_RICCO 0.0
Blast2go: hua enhancer 2 0.0
Putative coding
biog3_v1.0_unigene18008 biogeco3 v1.0 217
AutoFact: Eukaryotic translation initiation factor 4G n=2 Tax=Carica papaya RepID=E3V0H9_CARPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: translation initiation factor eif-4f 0.0
Putative N-terminus
biog3_v1.0_unigene18273 biogeco3 v1.0 133
AutoFact: Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 [Medicago truncatula] 0.0
Blast2go: regulator of nonsense transcripts 2-like 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain