Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: rRNA binding

Term: GO:0019843  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene100 biogeco3 v1.0 256
• AutoFact: 30S ribosomal protein S6 alpha [Arabidopsis thaliana] sp|Q8VY91.1|RR6_ARATH RecName: Full=30S ribosomal protein S6 alpha, chloroplastic; Flags: Precursor gb|AAL61951.1| plastid ribosomal protein S6, putative [Arabidopsis thaliana] gb|AAM47900.1| plastid r 5.04467e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene414 biogeco3 v1.0 871
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s11 0.0
Complete
biog3_v1.0_unigene1813 biogeco3 v1.0 604
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SJX0_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: structural constituent of 0.0
Putative C-terminus
biog3_v1.0_unigene2351 biogeco3 v1.0 1308
• AutoFact: replication factor C subunit 3 [Arabidopsis thaliana] gb|AAG51681.1|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana] gb|AAL38893.1| putative replication factor C [Arabidopsis thaliana] gb|AAM51357.1| putative replication facto 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: replication factor c subunit 5-like 0.0
Complete
biog3_v1.0_unigene4552 biogeco3 v1.0 812
• AutoFact: RecName: Full=50S ribosomal protein L4, chloroplastic; Short=R-protein L4; Flags: Precursor pdb|3BBO|G Chain G, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome emb|CAA75149.1| chloroplast ribosom 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 50s ribosomal protein l4 0.0
C-terminus
biog3_v1.0_unigene5777 biogeco3 v1.0 292
• AutoFact: plastid-specific 30S ribosomal protein [Oryza sativa Indica Group] 6.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: plastid-specific 30s ribosomal protein 3 0.0
Putative N-terminus
biog3_v1.0_unigene6656 biogeco3 v1.0 1225
• AutoFact: 50S ribosomal protein L3 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 50s ribosomal protein l3 0.0
C-terminus
biog3_v1.0_unigene6752 biogeco3 v1.0 516
• AutoFact: 50S ribosomal protein L10, putative n=1 Tax=Ricinus communis RepID=B9RY97_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene7573 biogeco3 v1.0 905
• AutoFact: 30S ribosomal protein S5, putative n=1 Tax=Ricinus communis RepID=B9RBC3_RICCO 1.96182e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 30s ribosomal protein s5 0.0
C-terminus
biog3_v1.0_unigene7841 biogeco3 v1.0 258
• AutoFact: 50S ribosomal protein L10, putative n=1 Tax=Ricinus communis RepID=B9RY97_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
biog3_v1.0_unigene8022 biogeco3 v1.0 428
• AutoFact: RecName: Full=50S ribosomal protein L5, chloroplastic pdb|3BBO|H Chain H, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 50s ribosomal protein l5 0.0
C-terminus
biog3_v1.0_unigene8152 biogeco3 v1.0 347
• AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 0.0
• FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
• Blast2go: ribosomal protein s3 0.0
Internal
biog3_v1.0_unigene9063 biogeco3 v1.0 336
• AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 0.0
• FL-Next: tr=Ribosomal protein S3; Cathaya argyrophylla. Mitochondrion. 0.0
• Blast2go: ribosomal protein s3 0.0
Internal
biog3_v1.0_unigene13493 biogeco3 v1.0 246
• AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 0.0
• FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
• Blast2go: ribosomal protein s3 0.0
C-terminus
biog3_v1.0_unigene13494 biogeco3 v1.0 371
• AutoFact: plastid-specific 30S ribosomal protein [Oryza sativa Indica Group] 6.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: plastid-specific 30s ribosomal protein 3 0.0
C-terminus
biog3_v1.0_unigene13982 biogeco3 v1.0 234
• AutoFact: 50S ribosomal protein L9, chloroplastic n=1 Tax=Pisum sativum RepID=RK9_PEA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 50s ribosomal protein l9 0.0
C-terminus
biog3_v1.0_unigene14195 biogeco3 v1.0 255
• AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 0.0
• FL-Next: sp=50S ribosomal protein L16, chloroplastic; Pinus flexilis. Plastid; Chloroplast. 0.0
• Blast2go: ribosomal protein s3 0.0
Internal
biog3_v1.0_unigene15916 biogeco3 v1.0 237
• AutoFact: RecName: Full=50S ribosomal protein L4, chloroplastic; Short=R-protein L4; Flags: Precursor pdb|3BBO|G Chain G, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome emb|CAA75149.1| chloroplast ribosom 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 50s ribosomal protein l4 0.0
N-terminus
biog3_v1.0_unigene16100 biogeco3 v1.0 248
• AutoFact: 30S ribosomal protein S5, putative n=1 Tax=Ricinus communis RepID=B9RBC3_RICCO 1.96182e-44
• Blast2go: 30s ribosomal protein s5 0.0
Coding
biog3_v1.0_unigene16886 biogeco3 v1.0 436
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SJX0_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: structural constituent of 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain