Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: intracellular part

Term: GO:0044424  Help

Source: GO from Blast2go

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene15009 biogeco3 v1.0 181
• AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 2.0e-32
• Blast2go: small nuclear ribonucleoprotein g 1.4013e-45
unknown
biog3_v1.0_unigene15376 biogeco3 v1.0 275
• AutoFact: root initiation defective 3 protein [Arabidopsis thaliana] emb|CAB66397.1| putative protein [Arabidopsis thaliana] gb|AAO42870.1| At3g49180 [Arabidopsis thaliana] dbj|BAE99952.1| hypothetical protein [Arabidopsis thaliana] gb|AEE78508.1| root initiation d 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: wd repeat-containing protein 18-like 0.0
Putative N-terminus
biog3_v1.0_unigene15641 biogeco3 v1.0 415
• AutoFact: winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana] gb|AAM10313.1| AT5g66100/K2A18_18 [Arabidopsis thaliana] gb|AAN31109.1| At5g66100/K2A18_18 [Arabidopsis thaliana] gb|AED98159.1| winged-helix DNA-binding transcription fac 5.0e-19
• Blast2go: lupus la 9.83978e-38
unknown
biog3_v1.0_unigene16070 biogeco3 v1.0 309
• AutoFact: winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana] gb|AAM10313.1| AT5g66100/K2A18_18 [Arabidopsis thaliana] gb|AAN31109.1| At5g66100/K2A18_18 [Arabidopsis thaliana] gb|AED98159.1| winged-helix DNA-binding transcription fac 5.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: lupus la 9.83978e-38
Internal
biog3_v1.0_unigene16601 biogeco3 v1.0 1924
• AutoFact: Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: tubulin beta-4 chain 0.0
Complete
biog3_v1.0_unigene16760 biogeco3 v1.0 68
• AutoFact: Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ 0.0
• Blast2go: beta-tubulin 2 0.0
unknown
biog3_v1.0_unigene17443 biogeco3 v1.0 178
• AutoFact: Ebola_NP domain containing protein 5.0e-06
• Blast2go: uncharacterized protein at5g39570-like 4.52195e-11
unknown
biog3_v1.0_unigene18380 biogeco3 v1.0 281
• AutoFact: WS02731.CR_G20 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02731_G20 3, mRNA sequence. 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: armadillo beta-catenin-like repeats-containing protein 0.0
Internal
biog3_v1.0_unigene18535 biogeco3 v1.0 225
• AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
• Blast2go: uncharacterized protein 0.0
unknown
biog3_v1.0_unigene18626 biogeco3 v1.0 203
• AutoFact: Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: beta chain 0.0
N-terminus
biog3_v1.0_unigene19210 biogeco3 v1.0 131
• AutoFact: sirtuin 1 [Arabidopsis thaliana] gb|AAG44850.1|AF283757_1 sir2-like protein [Arabidopsis thaliana] dbj|BAB09243.1| transcription regulator Sir2-like protein [Arabidopsis thaliana] gb|AED96677.1| sirtuin 1 [Arabidopsis thaliana] 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: sirtuin 1 0.0
Internal
biog3_v1.0_unigene20759 biogeco3 v1.0 242
• AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 4.0e-26
• FL-Next: sp=CRS2-associated factor 1, chloroplastic; Zea mays (Maize). 0.0
• Blast2go: crs2-associated factor 1 9.21957e-31
Internal
biog3_v1.0_unigene21022 biogeco3 v1.0 168
• AutoFact: winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana] gb|AAM10313.1| AT5g66100/K2A18_18 [Arabidopsis thaliana] gb|AAN31109.1| At5g66100/K2A18_18 [Arabidopsis thaliana] gb|AED98159.1| winged-helix DNA-binding transcription fac 5.0e-19
• Blast2go: lupus la 9.83978e-38
unknown
biog3_v1.0_unigene21518 biogeco3 v1.0 238
• AutoFact: CRS2-associated factor 2, chloroplastic n=2 Tax=Arabidopsis RepID=CAF2P_ARATH 3.0e-39
• FL-Next: sp=CRS2-associated factor 2, chloroplastic; Zea mays (Maize). 0.0
• Blast2go: crs2-associated factor 2 0.0
Internal
biog3_v1.0_unigene21883 biogeco3 v1.0 423
• AutoFact: sirtuin 1 [Arabidopsis thaliana] gb|AAG44850.1|AF283757_1 sir2-like protein [Arabidopsis thaliana] dbj|BAB09243.1| transcription regulator Sir2-like protein [Arabidopsis thaliana] gb|AED96677.1| sirtuin 1 [Arabidopsis thaliana] 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: sirtuin 1 0.0
C-terminus
biog3_v1.0_unigene21978 biogeco3 v1.0 239
• AutoFact: CRS2-associated factor 1 [Arabidopsis thaliana] sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAK76556.1| unkn 4.0e-25
• FL-Next: sp=CRS2-associated factor 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: crs2-associated factor 1 1.06168e-31
Internal
biog3_v1.0_unigene22418 biogeco3 v1.0 256
• AutoFact: RecName: Full=30S ribosomal protein 3, chloroplastic; AltName: Full=Plastid-specific 30S ribosomal protein 3; Short=PSRP-3; Flags: Precursor gb|AAF64163.1|AF239218_1 plastid-specific ribosomal protein 3 precursor [Spinacia oleracea] 5.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: plastid-specific 30s ribosomal protein 3 0.0
Putative N-terminus
biog3_v1.0_unigene22542 biogeco3 v1.0 399
• AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: uncharacterized protein 0.0
Internal
biog3_v1.0_unigene22964 biogeco3 v1.0 199
• AutoFact: Unassigned protein
• Blast2go: protein 0.0
unknown
biog3_v1.0_unigene23213 biogeco3 v1.0 232
• AutoFact: 60S ribosomal protein L34-1 n=28 Tax=Magnoliophyta RepID=RL341_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 60s ribosomal protein l34 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain