Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene90 biogeco3 v1.0 567
AutoFact: RecName: Full=Putative N6-adenosine-methyltransferase MT-A70-like gb|ABD28511.1| MT-A70 [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: n6-adenosine-methyltransferase mt-a70-like protein 0.0
Internal
biog3_v1.0_unigene163 biogeco3 v1.0 330
AutoFact: Dihydroorotate dehydrogenase (quinone), mitochondrial n=3 Tax=Arabidopsis RepID=PYRD_ARATH 3.0e-31
FL-Next: sp=Dihydroorotate dehydrogenase (quinone), mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dihydroorotate dehydrogenase 6.24232e-35
C-terminus
biog3_v1.0_unigene174 biogeco3 v1.0 486
AutoFact: RNA-binding S4 domain-containing protein [Arabidopsis thaliana] gb|AAL24321.1| Unknown protein [Arabidopsis thaliana] gb|AAN65106.1| Unknown protein [Arabidopsis thaliana] gb|AAO00774.1| Unknown protein [Arabidopsis thaliana] gb|AAP42730.1| At1g53120 [Ara 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding s4 domain-containing protein 0.0
Internal
biog3_v1.0_unigene295 biogeco3 v1.0 264
AutoFact: MEI2-like protein 4 [Arabidopsis thaliana] sp|Q9LYN7.1|AML4_ARATH RecName: Full=Protein MEI2-like 4; Short=AML4; AltName: Full=MEI2-like protein 4 emb|CAB87285.1| Mei2-like protein [Arabidopsis thaliana] dbj|BAE99028.1| Mei2-like protein [Arabidopsis thal 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein mei2-like 4-like 0.0
Internal
biog3_v1.0_unigene363 biogeco3 v1.0 923
AutoFact: Intron maturase, type II family protein [Arabidopsis thaliana] dbj|BAB10231.1| unnamed protein product [Arabidopsis thaliana] gb|AED95448.1| Intron maturase, type II family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized mitochondrial protein ymf11-like 0.0
Putative C-terminus
biog3_v1.0_unigene393 biogeco3 v1.0 782
AutoFact: APO protein 1 [Arabidopsis thaliana] gb|AEE34293.1| APO protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: apo protein 1 0.0
C-terminus
biog3_v1.0_unigene400 biogeco3 v1.0 1186
AutoFact: nucleic acid binding protein1 [Zea mays] gb|AAA33486.1| nucleic acid-binding protein [Zea mays] gb|ACG38158.1| ribonucleoprotein [Zea mays] gb|ACL52389.1| unknown [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 31 kda chloroplastic-like 0.0
Putative Complete
biog3_v1.0_unigene417 biogeco3 v1.0 424
AutoFact: FCA gamma [Brassica napus] 1.0e-11
Blast2go: flowering time control protein 1.37341e-12
Coding
biog3_v1.0_unigene479 biogeco3 v1.0 698
AutoFact: Ribonucleoside-diphosphate reductase n=1 Tax=Musa acuminata RepID=Q6RZW3_MUSAC 0.0
FL-Next: sp=Ribonucleoside-diphosphate reductase large subunit; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ribonucleoside-diphosphate reductase large subunit 0.0
Internal
biog3_v1.0_unigene698 biogeco3 v1.0 168
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9T0X5_RICCO 0.0
Blast2go: dead-box atp-dependent rna helicase 29-like 0.0
unknown
biog3_v1.0_unigene802 biogeco3 v1.0 592
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZV5_RICCO 6.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: agenet domain-containing protein 0.0
N-terminus
biog3_v1.0_unigene1173 biogeco3 v1.0 1664
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
biog3_v1.0_unigene1235 biogeco3 v1.0 689
AutoFact: splicing factor 3B subunit 4 [Arabidopsis thaliana] gb|AAD12222.1| putative spliceosome associated protein [Arabidopsis thaliana] gb|AAN12991.1| putative spliceosome-associated protein [Arabidopsis thaliana] gb|AEC06776.1| splicing factor 3B subunit 4 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 4-like 0.0
Putative C-terminus
biog3_v1.0_unigene1381 biogeco3 v1.0 319
AutoFact: polypyrimidine tract-binding protein 2 [Arabidopsis thaliana] sp|Q9FGL9.1|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2 dbj|BAB08421.1| polypyrimidine tract-binding RNA transport protein-like [Arabidopsis thaliana] gb|AAU90050.1 0.0
Blast2go: protein 0.0
unknown
biog3_v1.0_unigene1431 biogeco3 v1.0 518
AutoFact: poly(A) polymerase 1 [Arabidopsis thaliana] gb|AAF97277.1|AC034106_20 Strong similarity to nuclear poly(A) polymerase from Arabidopsis thaliana gb|AF255297 and contains a Nucleotidyltransferase PF|01909 domain. ESTs gb|AV536592, gb|AV553256, gb|AV561630, 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly polymerase 0.0
Internal
biog3_v1.0_unigene1436 biogeco3 v1.0 770
AutoFact: Ribonucleoprotein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RAR1_RICCO 5.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 0.0
C-terminus
biog3_v1.0_unigene1444 biogeco3 v1.0 375
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 0.0
C-terminus
biog3_v1.0_unigene1465 biogeco3 v1.0 819
AutoFact: smad nuclear-interacting protein 1 [Arabidopsis thaliana] sp|Q8W4D8.1|DDL_ARATH RecName: Full=FHA domain-containing protein DDL; AltName: Full=Protein DAWDLE gb|AAL32704.1| Unknown protein [Arabidopsis thaliana] gb|AAN15324.1| Unknown protein [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: fha domain-containing protein ddl 0.0
C-terminus
biog3_v1.0_unigene1566 biogeco3 v1.0 497
AutoFact: putative ribosomal protein S5 [Oryza sativa Japonica Group] dbj|BAD08197.1| putative ribosomal protein S5 [Oryza sativa Japonica Group] dbj|BAH00782.1| unnamed protein product [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein s5 family protein 0.0
C-terminus
biog3_v1.0_unigene1575 biogeco3 v1.0 411
AutoFact: RNA pseudourine synthase 6 [Arabidopsis thaliana] sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb|CAB36821.1| hypothe 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal pseudouridine 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain