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Assembly Name: biogeco3 v1.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene175 biogeco3 v1.0 323
AutoFact: RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribonucleotide reductase small subunit 0.0
Internal
biog3_v1.0_unigene235 biogeco3 v1.0 496
AutoFact: actin-related protein 5 [Arabidopsis thaliana] sp|Q940Z2.2|ARP5_ARATH RecName: Full=Actin-related protein 5 dbj|BAB03145.1| actin-like protein [Arabidopsis thaliana] gb|ACV53017.1| actin-related protein 5 [Arabidopsis thaliana] gb|ACV53018.1| actin-relate 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: actin-related protein 5 0.0
Complete
biog3_v1.0_unigene280 biogeco3 v1.0 1699
AutoFact: Cryptochrome 1a n=3 Tax=Physcomitrella patens RepID=E1C9X9_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: blue-light photoreceptor 0.0
Internal
biog3_v1.0_unigene725 biogeco3 v1.0 633
AutoFact: Nucleosome assembly protein family n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TVZ4_PHYPA 0.0
FL-Next: tr=Nucleosome assembly protein family; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: nucleosome assembly protein 1 2 0.0
N-terminus
biog3_v1.0_unigene839 biogeco3 v1.0 389
AutoFact: DNA helicase recq1, putative n=1 Tax=Ricinus communis RepID=B9S1J8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent dna helicase q-like 2 0.0
Internal
biog3_v1.0_unigene1127 biogeco3 v1.0 674
AutoFact: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; AltName: Full=P18; AltName: Full=dUTP pyrophosphatase gb|AAB22611.1| deoxyuridine triphosphatase [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: deoxyuridine 5 -triphosphate nucleotidohydrolase-like 0.0
Complete
biog3_v1.0_unigene1145 biogeco3 v1.0 450
AutoFact: Unassigned protein
FL-Next: sp=Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein breast cancer susceptibility 1 homolog 1.27195e-18
Internal
biog3_v1.0_unigene2181 biogeco3 v1.0 383
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 0.0
FL-Next: sp=FACT complex subunit SSRP1; Zea mays (Maize). 0.0
Blast2go: fact complex subunit ssrp1 0.0
Internal
biog3_v1.0_unigene2183 biogeco3 v1.0 733
AutoFact: actin-related protein 5 [Arabidopsis thaliana] sp|Q940Z2.2|ARP5_ARATH RecName: Full=Actin-related protein 5 dbj|BAB03145.1| actin-like protein [Arabidopsis thaliana] gb|ACV53017.1| actin-related protein 5 [Arabidopsis thaliana] gb|ACV53018.1| actin-relate 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: actin-related protein 5 0.0
C-terminus
biog3_v1.0_unigene2540 biogeco3 v1.0 751
AutoFact: BRCA1/BRCA2-containing complex subunit 3 [Arabidopsis thaliana] gb|AEE74463.1| BRCA1/BRCA2-containing complex subunit 3 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: brca1 brca2-containing complex subunit 3 0.0
N-terminus
biog3_v1.0_unigene3265 biogeco3 v1.0 450
AutoFact: DNA repair protein recA homolog 1, chloroplastic n=3 Tax=Arabidopsis thaliana RepID=RECAC_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna repair protein reca-like 1 0.0
Internal
biog3_v1.0_unigene3425 biogeco3 v1.0 540
AutoFact: Protein kinase APK1B, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SPN3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene3468 biogeco3 v1.0 219
AutoFact: [L] COG0708 Exonuclease III 0.0
FL-Next: sp=Apurinic endonuclease-redox protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: apurinic endonuclease-redox protein 0.0
Internal
biog3_v1.0_unigene3683 biogeco3 v1.0 359
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 0.0
FL-Next: sp=FACT complex subunit SSRP1; Catharanthus roseus (Madagascar periwinkle) (Vinca rosea). 0.0
Blast2go: fact complex subunit ssrp1 0.0
Internal
biog3_v1.0_unigene4408 biogeco3 v1.0 1275
AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
Complete
biog3_v1.0_unigene4565 biogeco3 v1.0 1336
AutoFact: amyloid beta precursor protein binding protein 1 [Arabidopsis thaliana] sp|P42744.1|ULA1_ARATH RecName: Full=NEDD8-activating enzyme E1 regulatory subunit; AltName: Full=Auxin-resistance protein AXR1 gb|AAB59348.1| ubiquitin-activating enzyme E1 [Arabidop 0.0
FL-Next: sp=NEDD8-activating enzyme E1 regulatory subunit; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: nedd8-activating enzyme e1 regulatory subunit 0.0
C-terminus
biog3_v1.0_unigene4651 biogeco3 v1.0 492
AutoFact: FACT complex subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TYN6_PHYPA 0.0
FL-Next: sp=FACT complex subunit SPT16; Zea mays (Maize). 0.0
Blast2go: fact complex subunit 0.0
Internal
biog3_v1.0_unigene4843 biogeco3 v1.0 710
AutoFact: FACT complex subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TYN6_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: fact complex subunit 0.0
Internal
biog3_v1.0_unigene4846 biogeco3 v1.0 892
AutoFact: 26S proteasome regulatory subunit S5A [Mesembryanthemum crystallinum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 26s proteasome non-atpase regulatory subunit 0.0
C-terminus
biog3_v1.0_unigene4889 biogeco3 v1.0 1658
AutoFact: Iron-sulfur cluster assembly protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8IR30_CHLRE 0.0
FL-Next: sp=NifU-like protein 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: at4g01940 t7b11_20 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain