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Assembly Name: biogeco3 v1.0

Name: DNA-directed RNA polymerase.

Term: EC:2.7.7.6  Help

Source: EC from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene445 biogeco3 v1.0 336
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna-directed rna polymerase iii subunit rpc1-like 0.0
Internal
biog3_v1.0_unigene1870 biogeco3 v1.0 976
• AutoFact: DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana] gb|AAK48978.1|AF370551_1 RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5 [Arabidopsis thaliana] gb|AAC28253.1| RNA polymerase I 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerases and iii subunit rpabc1 0.0
Complete
biog3_v1.0_unigene2848 biogeco3 v1.0 304
• AutoFact: DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AAK25914.1|AF360204_1 unknown protein [Arabidopsis thaliana] dbj|BAB02324.1| unnamed protein product [Arabidopsis thaliana] gb|AAK64110.1| unknown protein [Arabidopsis thaliana] gb|AEE754 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerase i subunit rpa49 0.0
N-terminus
biog3_v1.0_unigene3170 biogeco3 v1.0 575
• AutoFact: DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AAK25914.1|AF360204_1 unknown protein [Arabidopsis thaliana] dbj|BAB02324.1| unnamed protein product [Arabidopsis thaliana] gb|AAK64110.1| unknown protein [Arabidopsis thaliana] gb|AEE754 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerase i subunit rpa49 0.0
Internal
biog3_v1.0_unigene4281 biogeco3 v1.0 552
• AutoFact: RNA polymerase n=1 Tax=Elaeis guineensis RepID=B3TLS5_ELAGV 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerases and iii kda polypeptide 0.0
C-terminus
biog3_v1.0_unigene6495 biogeco3 v1.0 547
• AutoFact: 15.9 kDa subunit of RNA polymerase II n=8 Tax=core eudicotyledons RepID=O48890_ARATH 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb4 0.0
Putative Complete
biog3_v1.0_unigene6755 biogeco3 v1.0 287
• AutoFact: ATP-binding cassette transporter, subfamily I, member 15, ABC component protein PpABCI15 (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RAW0_PHYPA 0.0
• Blast2go: at4g04770 t4b21_16 0.0
unknown
biog3_v1.0_unigene6905 biogeco3 v1.0 560
• AutoFact: RNA polymerase sigma factor [Arabidopsis thaliana] emb|CAA77213.1| sigma-like factor [Arabidopsis thaliana] dbj|BAA78109.1| RNA polymerase sigma subunit SigE [Arabidopsis thaliana] dbj|BAB11572.1| sigma-like factor [Arabidopsis thaliana] dbj|BAH19595.1| A 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna polymerase sigma factor rpod-like 0.0
Internal
biog3_v1.0_unigene9269 biogeco3 v1.0 230
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TX75_VITVI 0.0
• FL-Next: sp=DNA-directed RNA polymerase; Vitis vinifera (Grape). 0.0
• Blast2go: dna-directed rna polymerase i subunit rpa2 0.0
Internal
biog3_v1.0_unigene9416 biogeco3 v1.0 281
• AutoFact: RNA polymerase sigma factor [Arabidopsis thaliana] emb|CAA77213.1| sigma-like factor [Arabidopsis thaliana] dbj|BAA78109.1| RNA polymerase sigma subunit SigE [Arabidopsis thaliana] dbj|BAB11572.1| sigma-like factor [Arabidopsis thaliana] dbj|BAH19595.1| A 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: rna polymerase sigma factor rpod-like 0.0
Internal
biog3_v1.0_unigene10152 biogeco3 v1.0 534
• AutoFact: RNA polymerase, dimerisation [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerase third largest subunit 0.0
Internal
biog3_v1.0_unigene10699 biogeco3 v1.0 1630
• AutoFact: ATP-binding cassette transporter, subfamily I, member 15, ABC component protein PpABCI15 (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RAW0_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: at4g04770 t4b21_16 0.0
C-terminus
biog3_v1.0_unigene11290 biogeco3 v1.0 645
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
C-terminus
biog3_v1.0_unigene14469 biogeco3 v1.0 228
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
unknown
biog3_v1.0_unigene14865 biogeco3 v1.0 181
• AutoFact: 15.9 kDa subunit of RNA polymerase II n=8 Tax=core eudicotyledons RepID=O48890_ARATH 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb4 0.0
unknown
biog3_v1.0_unigene15014 biogeco3 v1.0 176
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
N-terminus
biog3_v1.0_unigene15595 biogeco3 v1.0 445
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TX75_VITVI 0.0
• FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna-directed rna polymerase i subunit rpa2 0.0
Internal
biog3_v1.0_unigene16063 biogeco3 v1.0 275
• AutoFact: RNA polymerase sigma factor [Arabidopsis thaliana] emb|CAA77213.1| sigma-like factor [Arabidopsis thaliana] dbj|BAA78109.1| RNA polymerase sigma subunit SigE [Arabidopsis thaliana] dbj|BAB11572.1| sigma-like factor [Arabidopsis thaliana] dbj|BAH19595.1| A 0.0
• Blast2go: rna polymerase sigma factor rpod-like 0.0
Putative coding
biog3_v1.0_unigene16377 biogeco3 v1.0 232
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 0.0
• FL-Next: sp=DNA-directed RNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: dna-directed rna polymerase iii subunit rpc1-like 0.0
Internal
biog3_v1.0_unigene18514 biogeco3 v1.0 203
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA 0.0
• FL-Next: sp=DNA-directed RNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: dna-directed rna polymerase iii subunit rpc2 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain