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Assembly Name: biogeco3 v1.0

Name: ribonucleoprotein complex

Term: GO:0030529  Help

Source: GO from Blast2go

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene2 biogeco3 v1.0 574
• AutoFact: elongation factor like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u5 small nuclear ribonucleoprotein component 0.0
Putative C-terminus
biog3_v1.0_unigene11 biogeco3 v1.0 369
• AutoFact: Ribosomal protein L39e, putative n=1 Tax=Ricinus communis RepID=B9SC04_RICCO 7.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 60s ribosomal protein l39 1.1178e-29
Putative Complete
biog3_v1.0_unigene861 biogeco3 v1.0 390
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Putative N-terminus
biog3_v1.0_unigene1608 biogeco3 v1.0 458
• AutoFact: U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] ref|NP_849600.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] gb|AAF80219.1|AC025290_8 Contains similarity to an U5 snRNP-specific protein 116 kD from Homo sapiens 0.0
• FL-Next: sp=Elongation factor 2; Blastocystis hominis. 0.0
• Blast2go: u5 small nuclear ribonucleoprotein component 0.0
Internal
biog3_v1.0_unigene1837 biogeco3 v1.0 590
• AutoFact: Mo25 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene2136 biogeco3 v1.0 847
• AutoFact: Mo25 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative N-terminus
biog3_v1.0_unigene2177 biogeco3 v1.0 973
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein q 0.0
Putative C-terminus
biog3_v1.0_unigene2608 biogeco3 v1.0 330
• AutoFact: nuclear assembly factor 1 [Arabidopsis thaliana] gb|AAF86533.1|AC002560_26 F21B7.15 [Arabidopsis thaliana] gb|AEE27583.1| nuclear assembly factor 1 [Arabidopsis thaliana] 8.0e-38
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
• Blast2go: protein 4.18988e-43
Internal
biog3_v1.0_unigene3022 biogeco3 v1.0 304
• AutoFact: U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] ref|NP_849600.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] gb|AAF80219.1|AC025290_8 Contains similarity to an U5 snRNP-specific protein 116 kD from Homo sapiens 0.0
• Blast2go: u5 small nuclear ribonucleoprotein component 0.0
unknown
biog3_v1.0_unigene3085 biogeco3 v1.0 422
• AutoFact: nuclear assembly factor 1 [Arabidopsis thaliana] gb|AAF86533.1|AC002560_26 F21B7.15 [Arabidopsis thaliana] gb|AEE27583.1| nuclear assembly factor 1 [Arabidopsis thaliana] 8.0e-38
• Blast2go: protein 4.18988e-43
Coding
biog3_v1.0_unigene3929 biogeco3 v1.0 577
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thalia 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Putative N-terminus
biog3_v1.0_unigene4186 biogeco3 v1.0 530
• AutoFact: U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] ref|NP_849600.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana] gb|AAF80219.1|AC025290_8 Contains similarity to an U5 snRNP-specific protein 116 kD from Homo sapiens 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: u5 small nuclear ribonucleoprotein component 0.0
N-terminus
biog3_v1.0_unigene4310 biogeco3 v1.0 987
• AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 small nuclear ribonucleoprotein-70k 0.0
N-terminus
biog3_v1.0_unigene4449 biogeco3 v1.0 273
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Putative C-terminus
biog3_v1.0_unigene4604 biogeco3 v1.0 1392
• AutoFact: U3 small nucleolar ribonucleoprotein protein mpp10, putative n=1 Tax=Ricinus communis RepID=B9RB06_RICCO 0.0
• FL-Next: tr=U3 small nucleolar ribonucleoprotein protein mpp10, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: u3 small nucleolar ribonucleoprotein protein 0.0
Internal
biog3_v1.0_unigene5033 biogeco3 v1.0 1206
• AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 small nuclear ribonucleoprotein-70k 0.0
N-terminus
biog3_v1.0_unigene6301 biogeco3 v1.0 1343
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
C-terminus
biog3_v1.0_unigene7612 biogeco3 v1.0 421
• AutoFact: mitochondrial ribosomal protein L11 [Arabidopsis thaliana] emb|CAB54877.1| ribosomal protein L11 homolog [Arabidopsis thaliana] emb|CAB80265.1| ribosomal protein L11 homolog [Arabidopsis thaliana] gb|AAM67114.1| ribosomal protein L11-like protein [Arabido 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: mitochondrial ribosomal protein l11 0.0
N-terminus
biog3_v1.0_unigene7973 biogeco3 v1.0 467
• AutoFact: nuclear assembly factor 1 [Arabidopsis thaliana] gb|AAF86533.1|AC002560_26 F21B7.15 [Arabidopsis thaliana] gb|AEE27583.1| nuclear assembly factor 1 [Arabidopsis thaliana] 8.0e-38
• Blast2go: protein 4.18988e-43
Putative coding
biog3_v1.0_unigene8118 biogeco3 v1.0 436
• AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 4.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s28 2.37269e-25
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain