Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: biogeco3 v1.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene7 biogeco3 v1.0 455
• AutoFact: transcription factor Pur-alpha 1 [Arabidopsis thaliana] gb|AAL31888.1|AF419556_1 At2g32080/F22D22.17 [Arabidopsis thaliana] gb|AEC08632.1| transcription factor Pur-alpha 1 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene74 biogeco3 v1.0 1048
• AutoFact: pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rrp6-like protein 1 0.0
Putative Complete
biog3_v1.0_unigene96 biogeco3 v1.0 370
• AutoFact: DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana] sp|Q9SA27.1|RH36_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 36 gb|AAD34681.1|AC006341_9 Similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila melanogaster and is a member 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 36-like 0.0
Internal
biog3_v1.0_unigene132 biogeco3 v1.0 577
• AutoFact: Ank_2 domain containing protein 5.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 30-like 0.0
N-terminus
biog3_v1.0_unigene142 biogeco3 v1.0 323
• AutoFact: Ribonucleic acid binding protein S1, putative n=1 Tax=Ricinus communis RepID=B9RI44_RICCO 2.00386e-43
• Blast2go: ribonucleic acid binding protein 0.0
unknown
biog3_v1.0_unigene200 biogeco3 v1.0 393
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 3.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna and export factor binding 0.0
C-terminus
biog3_v1.0_unigene322 biogeco3 v1.0 577
• AutoFact: PREDICTED: similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI00019843BD 0.0
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: atp-dependent helicase rhp16-like 0.0
Internal
biog3_v1.0_unigene334 biogeco3 v1.0 261
• AutoFact: PREDICTED: similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI00019843BD 0.0
• Blast2go: atp-dependent helicase rhp16-like 0.0
Coding
biog3_v1.0_unigene349 biogeco3 v1.0 389
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: unknown [Picea sitchensis] 0.0
Internal
biog3_v1.0_unigene372 biogeco3 v1.0 418
• AutoFact: KH_1 domain containing protein 1.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 2.80546e-24
Internal
biog3_v1.0_unigene485 biogeco3 v1.0 397
• AutoFact: glycine-rich RNA-binding protein PsGRBP [Pisum sativum] gb|ACI15745.1| glycine-rich RNA-binding protein [Pisum sativum] 4.0e-12
• Blast2go: glycine-rich rna-binding protein 2 6.82991e-30
unknown
biog3_v1.0_unigene552 biogeco3 v1.0 407
• AutoFact: pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 0.0
• Blast2go: rrp6-like protein 1 0.0
unknown
biog3_v1.0_unigene667 biogeco3 v1.0 367
• AutoFact: DEAD-box ATP-dependent RNA helicase 50 [Arabidopsis thaliana] sp|Q8GUG7.2|RH50_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 50 gb|AAF27002.1|AC016827_13 putative DEAD/DEAH box helicase [Arabidopsis thaliana] gb|AAK82522.1| AT3g06980/F17A9_13 [A 3.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 50-like 0.0
Internal
biog3_v1.0_unigene706 biogeco3 v1.0 263
• AutoFact: Ank_2 domain containing protein 5.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 30-like 0.0
Internal
biog3_v1.0_unigene768 biogeco3 v1.0 1476
• AutoFact: putative DNA binding protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding post-transcriptional regulator csx1-like 0.0
C-terminus
biog3_v1.0_unigene783 biogeco3 v1.0 663
• AutoFact: DEAD box protein P68 [Pisum sativum] 0.0
• Blast2go: protein 0.0
unknown
biog3_v1.0_unigene816 biogeco3 v1.0 388
• AutoFact: putative E3 ubiquitin-protein ligase ARI8 [Arabidopsis thaliana] sp|Q8W468.1|ARI8_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase ARI8; AltName: Full=ARIADNE-like protein ARI8; AltName: Full=Protein ariadne homolog 8 gb|AAL32886.1| Unknown protei 0.0
• Blast2go: probable e3 ubiquitin-protein ligase ari7-like 0.0
unknown
biog3_v1.0_unigene861 biogeco3 v1.0 390
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Putative N-terminus
biog3_v1.0_unigene893 biogeco3 v1.0 779
• AutoFact: SAP domain-containing protein [Arabidopsis thaliana] ref|NP_001078515.1| SAP domain-containing protein [Arabidopsis thaliana] emb|CAA18754.1| putative protein [Arabidopsis thaliana] emb|CAB80631.1| putative protein [Arabidopsis thaliana] gb|AEE87103.1| SA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: sap domain-containing protein 0.0
Internal
biog3_v1.0_unigene989 biogeco3 v1.0 457
• AutoFact: putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] 0.0
• FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna-dependent rna polymerase 6 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain