Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: transcription, DNA-dependent

Term: GO:0006351  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene2924 biogeco3 v1.0 299
• AutoFact: protein kinase domain-containing protein [Arabidopsis thaliana] gb|AAM19803.1| At1g74320/F1O17_1 [Arabidopsis thaliana] gb|AAM98234.1| putative choline kinase [Arabidopsis thaliana] gb|AAP42750.1| At1g74320 [Arabidopsis thaliana] gb|AEE35577.1| protein ki 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: choline ethanolamine kinase 0.0
N-terminus
biog3_v1.0_unigene3170 biogeco3 v1.0 575
• AutoFact: DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AAK25914.1|AF360204_1 unknown protein [Arabidopsis thaliana] dbj|BAB02324.1| unnamed protein product [Arabidopsis thaliana] gb|AAK64110.1| unknown protein [Arabidopsis thaliana] gb|AEE754 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerase i subunit rpa49 0.0
Internal
biog3_v1.0_unigene3226 biogeco3 v1.0 885
• AutoFact: WRKY transcription factor PmWRKY115 (Fragment) n=3 Tax=Pinus monticola RepID=E6Y3E7_PINMO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: wrky transcription factor 0.0
Internal
biog3_v1.0_unigene3590 biogeco3 v1.0 1200
• AutoFact: AUX/IAA protein n=4 Tax=Solanum RepID=Q45UB0_SOLLC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: aux iaa protein 0.0
C-terminus
biog3_v1.0_unigene4281 biogeco3 v1.0 552
• AutoFact: RNA polymerase n=1 Tax=Elaeis guineensis RepID=B3TLS5_ELAGV 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerases and iii kda polypeptide 0.0
C-terminus
biog3_v1.0_unigene4468 biogeco3 v1.0 447
• AutoFact: Transcriptional factor B3; Auxin response factor [Medicago truncatula] 0.0
• FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
• Blast2go: auxin response 0.0
N-terminus
biog3_v1.0_unigene4534 biogeco3 v1.0 595
• AutoFact: AUX/IAA protein n=4 Tax=Solanum RepID=Q45UB0_SOLLC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: aux iaa protein 0.0
N-terminus
biog3_v1.0_unigene4535 biogeco3 v1.0 439
• AutoFact: TPA_inf: class IV HD-Zip protein HDZ41 [Physcomitrella patens] 0.0
• FL-Next: tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: homeodomain protein 0.0
Internal
biog3_v1.0_unigene4775 biogeco3 v1.0 286
• AutoFact: HLH domain containing protein 4.0e-13
• Blast2go: transcription factor bim1 0.0
Coding
biog3_v1.0_unigene4779 biogeco3 v1.0 1675
• AutoFact: WRKY DNA-binding protein [Nicotiana tabacum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable wrky transcription factor 2-like 0.0
N-terminus
biog3_v1.0_unigene4994 biogeco3 v1.0 323
• AutoFact: WRKY DNA-binding protein [Nicotiana tabacum] 0.0
• Blast2go: probable wrky transcription factor 2-like 0.0
Coding
biog3_v1.0_unigene5174 biogeco3 v1.0 834
• AutoFact: Bel1 homeotic protein, putative n=1 Tax=Ricinus communis RepID=B9SDI4_RICCO 0.0
• Blast2go: bel1 homeotic 0.0
unknown
biog3_v1.0_unigene5310 biogeco3 v1.0 373
• AutoFact: heat shock factor protein hsf8-related [Glycine max] 0.0
• Blast2go: heat shock transcription factor 1 0.0
unknown
biog3_v1.0_unigene5480 biogeco3 v1.0 437
• AutoFact: Bel1 homeotic protein, putative n=1 Tax=Ricinus communis RepID=B9SDI4_RICCO 0.0
• FL-Next: sp=BEL1-like homeodomain protein 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: bel1 homeotic 0.0
Internal
biog3_v1.0_unigene5501 biogeco3 v1.0 419
• AutoFact: [R] COG2940 Proteins containing SET domain 9.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone-lysine n-methyltransferase suvr5-like 0.0
C-terminus
biog3_v1.0_unigene5580 biogeco3 v1.0 596
• AutoFact: WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S4T8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative C-terminus
biog3_v1.0_unigene6215 biogeco3 v1.0 773
• AutoFact: protein kinase domain-containing protein [Arabidopsis thaliana] gb|AAM19803.1| At1g74320/F1O17_1 [Arabidopsis thaliana] gb|AAM98234.1| putative choline kinase [Arabidopsis thaliana] gb|AAP42750.1| At1g74320 [Arabidopsis thaliana] gb|AEE35577.1| protein ki 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: choline ethanolamine kinase 0.0
C-terminus
biog3_v1.0_unigene6340 biogeco3 v1.0 849
• AutoFact: Putative type-b response regulator (Sensor histidine kinase) n=1 Tax=Malus x domestica RepID=E4Z8Q8_MALDO 8.00001e-41
• Blast2go: two-component response regulator arr2-like 1.00893e-43
unknown
biog3_v1.0_unigene6495 biogeco3 v1.0 547
• AutoFact: 15.9 kDa subunit of RNA polymerase II n=8 Tax=core eudicotyledons RepID=O48890_ARATH 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb4 0.0
Putative Complete
biog3_v1.0_unigene6538 biogeco3 v1.0 563
• AutoFact: SCL domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJB4_MALDO 0.0
• FL-Next: tr=SCARECROW-like protein 1; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Blast2go: nodulation signaling pathway 1 protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain