Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: binding

Term: GO:0005488  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene832 biogeco3 v1.0 684
AutoFact: Mitochondrial substrate carrier family protein [Arabidopsis thaliana] gb|AEE83012.1| Mitochondrial substrate carrier family protein [Arabidopsis thaliana] 0.0
Blast2go: protein 0.0
unknown
biog3_v1.0_unigene853 biogeco3 v1.0 236
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 8.0e-07
Blast2go: probable atp-dependent rna helicase ythdc2-like 1.96745e-10
unknown
biog3_v1.0_unigene872 biogeco3 v1.0 366
AutoFact: Unassigned protein
Blast2go: protein 1.25868e-28
unknown
biog3_v1.0_unigene931 biogeco3 v1.0 344
AutoFact: GK15001 gene product from transcript GK15001-RA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hypothetical protein VITISV_037436 [Vitis vinifera] 0.0
Internal
biog3_v1.0_unigene1085 biogeco3 v1.0 861
AutoFact: SAP DNA-binding domain-containing protein n=1 Tax=Dictyostelium discoideum RepID=Q54WI5_DICDI 3.0e-38
Blast2go: ribonucleoprotein ptb-binding 1-like 0.0
Coding
biog3_v1.0_unigene1101 biogeco3 v1.0 389
AutoFact: SH3 domain-containing protein [Arabidopsis thaliana] gb|AAP04158.1| unknown protein [Arabidopsis thaliana] dbj|BAD93870.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06049.1| SH3 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: sh3 domain-containing protein 0.0
Internal
biog3_v1.0_unigene1115 biogeco3 v1.0 328
AutoFact: pfam00385, Chromo, Chromodomain 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: terminal flower 2 protein 0.0
Complete
biog3_v1.0_unigene1158 biogeco3 v1.0 815
AutoFact: Subtilisin-like protease n=2 Tax=Arabidopsis RepID=SUBL_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: subtilisin-like protease 0.0
Internal
biog3_v1.0_unigene1210 biogeco3 v1.0 441
AutoFact: SOUL heme-binding protein [Arabidopsis thaliana] gb|AAL38336.1| unknown protein [Arabidopsis thaliana] gb|AAN15391.1| unknown protein [Arabidopsis thaliana] gb|AED92799.1| SOUL heme-binding protein [Arabidopsis thaliana] 9.00054e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: soul heme-binding protein 0.0
N-terminus
biog3_v1.0_unigene1220 biogeco3 v1.0 328
AutoFact: Ubiquitin system component Cue protein [Arabidopsis thaliana] gb|AEE30873.1| Ubiquitin system component Cue protein [Arabidopsis thaliana] 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Trifolium repens (Creeping white clover). 0.0
Blast2go: ubiquitin system component cue protein 6.34634e-37
Internal
biog3_v1.0_unigene1229 biogeco3 v1.0 414
AutoFact: Sumo ligase, putative n=1 Tax=Ricinus communis RepID=B9SK46_RICCO 3.0e-34
Blast2go: e3 sumo-protein ligase siz1 4.28941e-35
unknown
biog3_v1.0_unigene1240 biogeco3 v1.0 493
AutoFact: Unassigned protein
FL-Next: sp=Pentatricopeptide repeat-containing protein At5g04810, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pentatricopeptide repeat-containing protein 1.94502e-32
C-terminus
biog3_v1.0_unigene1278 biogeco3 v1.0 896
AutoFact: Nucleoside diphosphate kinase n=2 Tax=Picea sitchensis RepID=A9NPA6_PICSI 0.0
FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleoside diphosphate kinase 1 0.0
Complete
biog3_v1.0_unigene1288 biogeco3 v1.0 555
AutoFact: Kinesin light chain, putative n=1 Tax=Ricinus communis RepID=B9RB32_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: kinesin light 0.0
Internal
biog3_v1.0_unigene1325 biogeco3 v1.0 675
AutoFact: NAD+ transporter 2 [Arabidopsis thaliana] gb|AAM13231.1| unknown protein [Arabidopsis thaliana] gb|AAP42759.1| At1g25380 [Arabidopsis thaliana] emb|CAR70089.1| mitochondrial nicotinamide adenine dinucleotide transporter 2 [Arabidopsis thaliana] gb|AEE3061 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mitochondrial carrier 0.0
Putative C-terminus
biog3_v1.0_unigene1342 biogeco3 v1.0 426
AutoFact: Short-chain dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RTW7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: short-chain dehydrogenase reductase family protein 0.0
C-terminus
biog3_v1.0_unigene1346 biogeco3 v1.0 330
AutoFact: neutral invertase-like protein [Arabidopsis thaliana] ref|NP_001031790.1| neutral invertase-like protein [Arabidopsis thaliana] emb|CAB45447.1| invertase-like protein [Arabidopsis thaliana] emb|CAB80203.1| invertase-like protein [Arabidopsis thaliana] gb| 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene1401 biogeco3 v1.0 428
AutoFact: Ran GTPase binding protein, putative n=3 Tax=rosids RepID=B9SM24_RICCO 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.20831e-29
C-terminus
biog3_v1.0_unigene1434 biogeco3 v1.0 506
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SV05_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone-lysine n-methyltransferase 0.0
Complete
biog3_v1.0_unigene1446 biogeco3 v1.0 541
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SQC8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain