Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene8344 biogeco3 v1.0 704
• AutoFact: RNA polymerase II transcriptional coactivator KIWI n=4 Tax=Arabidopsis RepID=KIWI_ARATH 9.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna polymerase ii transcriptional coactivator kiwi 0.0
Putative Complete
biog3_v1.0_unigene8375 biogeco3 v1.0 274
• AutoFact: sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gb|AAM13041.1| unknown protein [Arabidopsis thaliana] gb|AAO30091.1| unknown protein [Arabidopsis thaliana] gb|AEE76088.1| sequence-specific DNA binding transcription factor [Arabid 0.0
• Blast2go: sequence-specific dna binding transcription factor 0.0
unknown
biog3_v1.0_unigene8392 biogeco3 v1.0 311
• AutoFact: AP2-related transcription factor AP2L3 (Fragment) n=2 Tax=Picea RepID=Q106U2_PICAB 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: apetala2-like protein 0.0
N-terminus
biog3_v1.0_unigene8495 biogeco3 v1.0 1413
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SGW9_RICCO 9.80909e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: two-component response regulator ehd1 0.0
Complete
biog3_v1.0_unigene8721 biogeco3 v1.0 239
• AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 3.0e-30
• FL-Next: sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris). 0.0
• Blast2go: fact complex subunit ssrp1 1.27339e-34
C-terminus
biog3_v1.0_unigene8730 biogeco3 v1.0 615
• AutoFact: putative helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna helicase ino80-like 0.0
Complete
biog3_v1.0_unigene8747 biogeco3 v1.0 253
• AutoFact: ADP-ribosylation factor 3 n=21 Tax=Magnoliophyta RepID=ARF3_ARATH 0.0
• Blast2go: adp-ribosylation factor 3 0.0
unknown
biog3_v1.0_unigene8945 biogeco3 v1.0 651
• AutoFact: Class III homeodomain leucine zipper protein n=18 Tax=Spermatophyta RepID=E7DX24_PICGL 0.0
• FL-Next: tr=Class III HD-Zip protein HDZ31; Pinus taeda (Loblolly pine). 0.0
• Blast2go: homeodomain-leucine zipper trancription factor hb-3 0.0
C-terminus
biog3_v1.0_unigene9043 biogeco3 v1.0 397
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SR79_RICCO 1.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: kanadi like transcription factor 6.16344e-36
Internal
biog3_v1.0_unigene9118 biogeco3 v1.0 214
• AutoFact: bZIP transcription factor bZIP28 [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: basic leucine zipper transcription factor-like protein 0.0
Internal
biog3_v1.0_unigene9140 biogeco3 v1.0 220
• AutoFact: Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens RepID=E1C9M6_PHYPA 0.0
• Blast2go: rna sigma 70 subfamily 0.0
unknown
biog3_v1.0_unigene9157 biogeco3 v1.0 328
• AutoFact: small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis 3.0e-30
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: small nuclear ribonucleoprotein associated protein b 8.18162e-41
N-terminus
biog3_v1.0_unigene9203 biogeco3 v1.0 364
• AutoFact: WRKY DNA-binding protein 21 [Arabidopsis thaliana] sp|O04336.1|WRK21_ARATH RecName: Full=Probable WRKY transcription factor 21; AltName: Full=WRKY DNA-binding protein 21 gb|AAK28441.1|AF272747_1 WRKY DNA-binding protein 21 [Arabidopsis thaliana] gb|AAB630 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: wrky dna-binding protein 21 0.0
N-terminus
biog3_v1.0_unigene9233 biogeco3 v1.0 287
• AutoFact: homeodomain-leucine zipper protein 56 [Glycine max] 8.00001e-41
• Blast2go: homeobox-leucine zipper protein athb-6-like 0.0
unknown
biog3_v1.0_unigene9275 biogeco3 v1.0 606
• AutoFact: WD repeat-containing protein 5 [Danio rerio] gb|AAH52124.1| Wdr5 protein [Danio rerio] gb|AAH66729.1| Wdr5 protein [Danio rerio] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: wd40 repeat compass complex protein 0.0
C-terminus
biog3_v1.0_unigene9359 biogeco3 v1.0 652
• AutoFact: Pseudo response regulator n=1 Tax=Selaginella moellendorffii RepID=D8T4E0_SELML 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pseudo response regulator 0.0
Internal
biog3_v1.0_unigene9380 biogeco3 v1.0 1199
• AutoFact: Histone acetyltransferase n=5 Tax=rosids RepID=B9H794_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone acetyltransferase 0.0
C-terminus
biog3_v1.0_unigene9388 biogeco3 v1.0 313
• AutoFact: Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL 0.0
• FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: leucine-rich repeat receptor-like protein kinase 0.0
Internal
biog3_v1.0_unigene9467 biogeco3 v1.0 392
• AutoFact: AP2-related transcription factor AP2L3 (Fragment) n=2 Tax=Picea RepID=Q106U2_PICAB 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: apetala2-like protein 0.0
C-terminus
biog3_v1.0_unigene9563 biogeco3 v1.0 991
• AutoFact: Ras-related protein Rab-18 n=4 Tax=Poaceae RepID=B6TCF9_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ras-related protein rab-18 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain