Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene19325 biogeco3 v1.0 441
• AutoFact: AP2 domain-containing transcription factor 7 n=1 Tax=Glycine max RepID=C9WA65_SOYBN 2.0e-31
• Blast2go: dehydration responsive element binding protein 7.17662e-34
unknown
biog3_v1.0_unigene19368 biogeco3 v1.0 211
• AutoFact: Phytochrome n=1 Tax=Marchantia paleacea var. diptera RepID=Q9AVP3_MARPA 0.0
• FL-Next: sp=Phytochrome; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: phytochrome 0.0
Internal
biog3_v1.0_unigene19472 biogeco3 v1.0 163
• AutoFact: DUF547 domain containing protein 1.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ternary complex factor mip1-like 0.0
Internal
biog3_v1.0_unigene19563 biogeco3 v1.0 216
• AutoFact: WS00753.C21_I19 WS-PS-N-A-8 Picea glauca cDNA clone WS00753_I19 3, mRNA sequence. 0.0
• FL-Next: tr=C2H2L domain class transcription factor; Malus domestica (Apple) (Pyrus malus). 0.0
• Blast2go: indeterminate -domain 14 protein 4.48416e-44
Internal
biog3_v1.0_unigene19570 biogeco3 v1.0 169
• AutoFact: MADS-box transcription factor GbMADS3 n=1 Tax=Ginkgo biloba RepID=Q58A80_GINBI 0.0
• Blast2go: mads-box transcription factor 3 0.0
unknown
biog3_v1.0_unigene19581 biogeco3 v1.0 409
• AutoFact: DELLA protein n=3 Tax=Malus RepID=Q0HA72_MALDO 0.0
• FL-Next: sp=DELLA protein GAI; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Blast2go: della protein 0.0
Internal
biog3_v1.0_unigene19669 biogeco3 v1.0 104
• AutoFact: WRKY DNA-binding protein 21 [Arabidopsis thaliana] sp|O04336.1|WRK21_ARATH RecName: Full=Probable WRKY transcription factor 21; AltName: Full=WRKY DNA-binding protein 21 gb|AAK28441.1|AF272747_1 WRKY DNA-binding protein 21 [Arabidopsis thaliana] gb|AAB630 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: wrky dna-binding protein 21 0.0
Internal
biog3_v1.0_unigene19701 biogeco3 v1.0 292
• AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SCL9_RICCO 1.0e-18
• Blast2go: acyl- n-acyltransferase with ring fyve phd-type zinc finger domain-containing protein 2.17577e-19
unknown
biog3_v1.0_unigene19899 biogeco3 v1.0 295
• AutoFact: GRAS family transcription factor n=2 Tax=Populus trichocarpa RepID=B9GTP1_POPTR 0.0
• FL-Next: tr=SCARECROW-like protein 1; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Blast2go: scarecrow-like protein 1-like 0.0
Internal
biog3_v1.0_unigene19912 biogeco3 v1.0 128
• AutoFact: MADS-box transcription factor GbMADS3 n=1 Tax=Ginkgo biloba RepID=Q58A80_GINBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: mads-box transcription factor 3 0.0
Internal
biog3_v1.0_unigene19982 biogeco3 v1.0 192
• AutoFact: transcription factor TCP4 [Arabidopsis thaliana] ref|NP_850589.1| transcription factor TCP4 [Arabidopsis thaliana] ref|NP_001189896.1| transcription factor TCP4 [Arabidopsis thaliana] sp|Q8LPR5.1|TCP4_ARATH RecName: Full=Transcription factor TCP4; AltName 9.0e-34
• Blast2go: transcription factor tcp4 4.49701e-39
unknown
biog3_v1.0_unigene20010 biogeco3 v1.0 200
• AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna topoisomerase ii 0.0
N-terminus
biog3_v1.0_unigene20073 biogeco3 v1.0 313
• AutoFact: Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens RepID=E1C9M6_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna sigma 70 subfamily 0.0
Internal
biog3_v1.0_unigene20137 biogeco3 v1.0 399
• AutoFact: [K] COG5190 TFIIF-interacting CTD phosphatases, including NLI-interacting factor 2.0e-07
• FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna polymerase ii c-terminal domain phosphatase-like 3-like 0.0
Internal
biog3_v1.0_unigene20173 biogeco3 v1.0 293
• AutoFact: Global transcription factor group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I6M9_POPTR 0.0
• FL-Next: sp=FACT complex subunit SPT16; Zea mays (Maize). 0.0
• Blast2go: global transcription factor group 0.0
Internal
biog3_v1.0_unigene20291 biogeco3 v1.0 243
• AutoFact: Scarecrow-like 1 transcription factor (Fragment) n=1 Tax=Pinus pinaster RepID=B1PPU0_PINPS 0.0
• Blast2go: gras family transcription factor 0.0
Putative coding
biog3_v1.0_unigene20389 biogeco3 v1.0 224
• AutoFact: DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] sp|Q8RXS6.2|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gb|AEE79637.1| DNA helicase INO80 complex-like 1 [Arabidopsis tha 0.0
• FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog3_v1.0_unigene20416 biogeco3 v1.0 442
• AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 0.0
• FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: phytochrome 0.0
Internal
biog3_v1.0_unigene20430 biogeco3 v1.0 316
• AutoFact: DELLA domain GRAS family transcription factor rga-like protein n=2 Tax=Populus trichocarpa RepID=B9GV61_POPTR 0.0
• Blast2go: della protein 0.0
unknown
biog3_v1.0_unigene20527 biogeco3 v1.0 401
• AutoFact: pfam03514, GRAS, GRAS family transcription factor 0.0
• FL-Next: sp=Chitin-inducible gibberellin-responsive protein 2; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: chitin-inducible gibberellin-responsive protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain