Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene2600 biogeco3 v1.0 714
AutoFact: NAC domain-containing protein 78 [Arabidopsis thaliana] sp|Q84K00.2|NAC78_ARATH RecName: Full=NAC domain-containing protein 78; Short=ANAC078 emb|CAB85547.1| putative protein [Arabidopsis thaliana] gb|AAM20460.1| putative protein [Arabidopsis thaliana] gb 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nac domain ipr003441 0.0
N-terminus
biog3_v1.0_unigene2641 biogeco3 v1.0 343
AutoFact: ADP-ribosylation factor-like A1D [Arabidopsis thaliana] gb|AAK96715.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gb|AAL47331.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gb|AAM65030.1| ADP-ribosylation factor-like prote 0.0
Blast2go: adp-ribosylation factor-like protein 0.0
Putative coding
biog3_v1.0_unigene2647 biogeco3 v1.0 373
AutoFact: PCF11P-similar protein 4 [Arabidopsis thaliana] dbj|BAF00997.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82437.1| PCF11P-similar protein 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene2658 biogeco3 v1.0 1172
AutoFact: WS0383.C21_J13 SS-B-23 Picea sitchensis cDNA clone WS0383_J13 3', mRNA sequence. 0.0
FL-Next: sp=Nuclear cap-binding protein subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: nuclear cap-binding protein 0.0
Putative C-terminus
biog3_v1.0_unigene2661 biogeco3 v1.0 289
AutoFact: Ubiquitin; TRAF-like [Medicago truncatula] 4.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin 0.0
Putative N-terminus
biog3_v1.0_unigene2694 biogeco3 v1.0 259
AutoFact: abhydrolase domain-containing protein 13 [Danio rerio] sp|Q32LS6.1|ABHDD_DANRE RecName: Full=Abhydrolase domain-containing protein 13 gb|AAI09446.1| Zgc:123286 [Danio rerio] 2.8026e-45
Blast2go: protein 0.0
unknown
biog3_v1.0_unigene2701 biogeco3 v1.0 361
AutoFact: leaf and flower related protein [Arabidopsis thaliana] dbj|BAB02090.1| unnamed protein product [Arabidopsis thaliana] gb|AAL60013.1| unknown protein [Arabidopsis thaliana] gb|AAM20062.1| unknown protein [Arabidopsis thaliana] gb|AEE76703.1| leaf and flowe 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: leaf and flower related protein 0.0
N-terminus
biog3_v1.0_unigene2720 biogeco3 v1.0 1431
AutoFact: homeodomain-leucine zipper protein 57 [Glycine max] 5.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: homeobox-leucine zipper protein athb-6-like 2.01282e-38
Putative N-terminus
biog3_v1.0_unigene2743 biogeco3 v1.0 466
AutoFact: Putative methyl-binding domain protein n=1 Tax=Cryptomeria japonica RepID=Q1XG62_CRYJA 9.94922e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methyl-binding domain protein 0.0
N-terminus
biog3_v1.0_unigene2745 biogeco3 v1.0 427
AutoFact: MYB transcription factor [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: myb transcription factor 0.0
Internal
biog3_v1.0_unigene2756 biogeco3 v1.0 382
AutoFact: Nuclear fusion defective 4 protein n=3 Tax=Arabidopsis RepID=F4I9E1_ARATH 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: major facilitator protein 1.8657e-14
N-terminus
biog3_v1.0_unigene2764 biogeco3 v1.0 335
AutoFact: Set domain protein, putative n=1 Tax=Ricinus communis RepID=B9S8S4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone-lysine n-methyltransferase suvr5-like 0.0
Internal
biog3_v1.0_unigene2769 biogeco3 v1.0 1339
AutoFact: Class III homeodomain leucine zipper protein n=18 Tax=Spermatophyta RepID=E7DX24_PICGL 0.0
FL-Next: tr=Class III HD-Zip protein HDZ31; Pinus taeda (Loblolly pine). 0.0
Blast2go: homeodomain-leucine zipper trancription factor hb-3 0.0
Internal
biog3_v1.0_unigene2831 biogeco3 v1.0 1021
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SV05_VITVI 0.0
FL-Next: Isoform 2 of Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 0.0
Blast2go: histone-lysine n-methyltransferase 0.0
Putative N-terminus
biog3_v1.0_unigene2848 biogeco3 v1.0 304
AutoFact: DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AAK25914.1|AF360204_1 unknown protein [Arabidopsis thaliana] dbj|BAB02324.1| unnamed protein product [Arabidopsis thaliana] gb|AAK64110.1| unknown protein [Arabidopsis thaliana] gb|AEE754 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-directed rna polymerase i subunit rpa49 0.0
N-terminus
biog3_v1.0_unigene2868 biogeco3 v1.0 503
AutoFact: NAC domain-containing protein 78 [Arabidopsis thaliana] sp|Q84K00.2|NAC78_ARATH RecName: Full=NAC domain-containing protein 78; Short=ANAC078 emb|CAB85547.1| putative protein [Arabidopsis thaliana] gb|AAM20460.1| putative protein [Arabidopsis thaliana] gb 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nac domain ipr003441 0.0
N-terminus
biog3_v1.0_unigene2876 biogeco3 v1.0 632
AutoFact: CBL-interacting serine/threonine-protein kinase, putative n=1 Tax=Ricinus communis RepID=B9T407_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cbl-interacting serine threonine-protein 0.0
Putative N-terminus
biog3_v1.0_unigene2882 biogeco3 v1.0 920
AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-07
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: wd repeat-containing 0.0
C-terminus
biog3_v1.0_unigene2928 biogeco3 v1.0 248
AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
Blast2go: eukaryotic translation initiation factor 3 subunit b-like 0.0
unknown
biog3_v1.0_unigene2934 biogeco3 v1.0 755
AutoFact: Vacuolar protein sorting-associated protein VPS9, putative n=1 Tax=Ricinus communis RepID=B9RJC2_RICCO 0.0
FL-Next: sp=Vacuolar protein sorting-associated protein 9A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: vacuolar sorting protein 9 domain-containing protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain