Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Blast2go

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene2354 biogeco3 v1.0 742
• AutoFact: Vacuolar protein sorting-associated protein VPS4, putative n=3 Tax=Spermatophyta RepID=B9SCR4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: vacuolar sorting protein 4b 0.0
C-terminus
biog3_v1.0_unigene2361 biogeco3 v1.0 538
• AutoFact: Class III homeodomain leucine zipper protein n=6 Tax=Spermatophyta RepID=E7DX26_PICGL 0.0
• FL-Next: tr=Class III HD-Zip protein HDZ32; Pinus taeda (Loblolly pine). 0.0
• Blast2go: homeodomain-leucine zipper trancription factor hb-3 0.0
Internal
biog3_v1.0_unigene2379 biogeco3 v1.0 322
• AutoFact: phaseolin G-box binding protein PG2 [Phaseolus vulgaris] 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor 0.0
C-terminus
biog3_v1.0_unigene2387 biogeco3 v1.0 442
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S7Q8_RICCO 9.0e-37
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: pentatricopeptide repeat-containing protein 2.56438e-43
Internal
biog3_v1.0_unigene2399 biogeco3 v1.0 299
• AutoFact: DUF947 domain containing protein 5.0e-34
• Blast2go: uncharacterized protein 0.0
Coding
biog3_v1.0_unigene2400 biogeco3 v1.0 487
• AutoFact: protein tornado 1 [Arabidopsis thaliana] dbj|BAB08571.1| unnamed protein product [Arabidopsis thaliana] gb|AED96644.1| protein tornado 1 [Arabidopsis thaliana] 5.0e-09
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: nucleotide-binding oligomerization domain-containing protein 7.82653e-19
N-terminus
biog3_v1.0_unigene2434 biogeco3 v1.0 784
• AutoFact: transcription initiation factor IIB-2 [Arabidopsis thaliana] sp|Q9SS44.1|TF2B2_ARATH RecName: Full=Transcription initiation factor IIB-2; AltName: Full=General transcription factor TFIIB-2; Short=AtTFIIB2 gb|AAF02810.1|AC009400_6 transcription initiation 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription initiation factor iib 0.0
N-terminus
biog3_v1.0_unigene2461 biogeco3 v1.0 212
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9T0X5_RICCO 0.0
• Blast2go: dead-box atp-dependent rna helicase 29-like 0.0
unknown
biog3_v1.0_unigene2466 biogeco3 v1.0 1338
• AutoFact: Syntaxin/t-SNARE family protein [Arabidopsis thaliana] gb|AAK96588.1| At1g27700/T22C5_14 [Arabidopsis thaliana] gb|AAM19970.1| At1g27700/T22C5_14 [Arabidopsis thaliana] gb|AEE30866.1| Syntaxin/t-SNARE family protein [Arabidopsis thaliana] 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: syntaxin family protein 0.0
Complete
biog3_v1.0_unigene2496 biogeco3 v1.0 876
• AutoFact: Cyclin-C1-1 n=8 Tax=Poaceae RepID=CCC11_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: cyclin family protein 0.0
Complete
biog3_v1.0_unigene2497 biogeco3 v1.0 1221
• AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: eukaryotic translation initiation factor 3 subunit b-like 0.0
N-terminus
biog3_v1.0_unigene2504 biogeco3 v1.0 572
• AutoFact: Calcium dependent protein kinase 14 n=2 Tax=Populus trichocarpa RepID=B9GEZ7_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: calcium-dependent protein 0.0
C-terminus
biog3_v1.0_unigene2517 biogeco3 v1.0 538
• AutoFact: Polcalcin (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9H5_PSEMZ 0.0
• FL-Next: sp=Probable calcium-binding protein CML25; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: polcalcin 0.0
Complete
biog3_v1.0_unigene2530 biogeco3 v1.0 509
• AutoFact: floral homeotic protein HUA1 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 37 0.0
Internal
biog3_v1.0_unigene2538 biogeco3 v1.0 344
• AutoFact: Bet1-like SNARE 1-1 [Arabidopsis thaliana] sp|Q9M2J9.1|BET11_ARATH RecName: Full=Bet1-like SNARE 1-1; Short=AtBET11; AltName: Full=Bet1/Sft1-like SNARE 14a; Short=AtBS14a gb|AAK52976.1|AF368175_1 Bet1/Sft1-like SNARE AtBS14a [Arabidopsis thaliana] emb|CAB 8.00141e-43
• Blast2go: bet1-like snare 1-1 0.0
unknown
biog3_v1.0_unigene2540 biogeco3 v1.0 751
• AutoFact: BRCA1/BRCA2-containing complex subunit 3 [Arabidopsis thaliana] gb|AEE74463.1| BRCA1/BRCA2-containing complex subunit 3 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: brca1 brca2-containing complex subunit 3 0.0
N-terminus
biog3_v1.0_unigene2573 biogeco3 v1.0 442
• AutoFact: Exosome complex exonuclease rrp45, putative n=1 Tax=Ricinus communis RepID=B9SYQ9_RICCO 0.0
• Blast2go: 3 -5 -exoribonuclease cer7 protein 0.0
unknown
biog3_v1.0_unigene2576 biogeco3 v1.0 1068
• AutoFact: acyl-CoA binding protein 4 [Arabidopsis thaliana] sp|Q9MA55.1|ACBP4_ARATH RecName: Full=Acyl-CoA-binding domain-containing protein 4; Short=Acyl-CoA binding protein 4 gb|AAF64540.1| unknown protein [Arabidopsis thaliana] gb|AAP21266.1| At3g05420 [Arabidop 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: acyl- binding protein 4 0.0
Internal
biog3_v1.0_unigene2580 biogeco3 v1.0 497
• AutoFact: pfam00956, NAP, Nucleosome assembly protein (NAP) 0.0
• Blast2go: protein set 0.0
unknown
biog3_v1.0_unigene2583 biogeco3 v1.0 245
• AutoFact: 26S proteasome regulatory subunit N2 [Arabidopsis thaliana] gb|AAC04490.1| 26S proteasome regulatory subunit (RPN2), putative [Arabidopsis thaliana] gb|AAM20712.1| 26S proteasome regulatory subunit [Arabidopsis thaliana] gb|AEC08730.1| 26S proteasome regu 0.0
• Blast2go: 26s proteasome regulatory subunit n2 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain