Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Blast2go

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene21980 biogeco3 v1.0 264
• AutoFact: Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana] gb|AAP04148.1| unknown protein [Arabidopsis thaliana] dbj|BAF01468.1| hypothetical protein [Arabidopsis thaliana] gb|AEE75129.1| Cleavage and polyadenylation s 0.0
• Blast2go: cleavage and polyadenylation specificity factor a subunit protein 0.0
unknown
biog3_v1.0_unigene21986 biogeco3 v1.0 345
• AutoFact: Protease degQ, putative n=1 Tax=Ricinus communis RepID=B9SF71_RICCO 0.0
• Blast2go: serine-type peptidase 0.0
Putative coding
biog3_v1.0_unigene21998 biogeco3 v1.0 280
• AutoFact: Exosome complex exonuclease rrp45, putative n=1 Tax=Ricinus communis RepID=B9SYQ9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
• Blast2go: 3 -5 -exoribonuclease cer7 protein 0.0
Internal
biog3_v1.0_unigene22012 biogeco3 v1.0 128
• AutoFact: MADS-box protein n=7 Tax=Pinaceae RepID=A0S6W4_9CONI 0.0
• Blast2go: mads-box transcription factor 0.0
unknown
biog3_v1.0_unigene22031 biogeco3 v1.0 225
• AutoFact: Huntingtin interacting protein, putative n=1 Tax=Ricinus communis RepID=B9S2T8_RICCO 1.0e-28
• Blast2go: histone-lysine n-methyltransferase ashh2-like 1.01747e-33
Putative coding
biog3_v1.0_unigene22032 biogeco3 v1.0 320
• AutoFact: serine/threonine-protein kinase-like protein CCR2 [Arabidopsis thaliana] sp|O80963.1|ACCR2_ARATH RecName: Full=Serine/threonine-protein kinase-like protein CCR2; AltName: Full=Protein CRINKLY 4 RELATED 2; Short=AtCRR2; Flags: Precursor gb|AAC28989.1| puta 5.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 7.33471e-36
Internal
biog3_v1.0_unigene22035 biogeco3 v1.0 179
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uncharacterized protein loc100254898 0.0
Internal
biog3_v1.0_unigene22046 biogeco3 v1.0 256
• AutoFact: protein tornado 1 [Arabidopsis thaliana] dbj|BAB08571.1| unnamed protein product [Arabidopsis thaliana] gb|AED96644.1| protein tornado 1 [Arabidopsis thaliana] 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: protein tornado 1 1.86032e-23
Internal
biog3_v1.0_unigene22052 biogeco3 v1.0 174
• AutoFact: hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] emb|CAB16840.1| putative protein [Arabidopsis thaliana] emb|CAB80319.1| putative protein [Arabidopsis thaliana] gb|AAM65130.1| unknown [Arabidopsis thaliana] dbj|BAE99098.1| hypothetical pro 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: alpha beta fold family protein 0.0
N-terminus
biog3_v1.0_unigene22060 biogeco3 v1.0 372
• AutoFact: PREDICTED: similar to FIO1 (FIONA1) n=1 Tax=Vitis vinifera RepID=UPI0001982DB3 0.0
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
• Blast2go: ribosomal rna large subunit methyltransferase f 0.0
Internal
biog3_v1.0_unigene22066 biogeco3 v1.0 207
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9T0X5_RICCO 0.0
• FL-Next: sp=Putative DEAD-box ATP-dependent RNA helicase 29; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dead-box atp-dependent rna helicase 29-like 0.0
Internal
biog3_v1.0_unigene22071 biogeco3 v1.0 158
• AutoFact: zinc finger protein [Nicotiana benthamiana] 1.96182e-44
• Blast2go: zinc finger hit domain-containing protein 1 0.0
unknown
biog3_v1.0_unigene22136 biogeco3 v1.0 434
• AutoFact: ERM multi-domain protein 9.0e-06
• Blast2go: protein 0.0
Coding
biog3_v1.0_unigene22176 biogeco3 v1.0 225
• AutoFact: Anaphase-promoting complex subunit 2 n=2 Tax=Arabidopsis RepID=APC2_ARATH 2.0e-10
• FL-Next: sp=Anaphase-promoting complex subunit 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: anaphase-promoting complex subunit 2.79441e-11
C-terminus
biog3_v1.0_unigene22228 biogeco3 v1.0 237
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: c2-h2 zinc finger protein 0.0
Internal
biog3_v1.0_unigene22229 biogeco3 v1.0 328
• AutoFact: Exosome complex exonuclease rrp45, putative n=1 Tax=Ricinus communis RepID=B9SYQ9_RICCO 0.0
• FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
• Blast2go: 3 -5 -exoribonuclease cer7 protein 0.0
Internal
biog3_v1.0_unigene22242 biogeco3 v1.0 138
• AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 0.0
• Blast2go: histone deacetylase 0.0
unknown
biog3_v1.0_unigene22263 biogeco3 v1.0 197
• AutoFact: DELLA domain GRAS family transcription factor rga-like protein n=2 Tax=Populus trichocarpa RepID=B9GV61_POPTR 0.0
• FL-Next: sp=DELLA protein RGA; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: della protein 0.0
Internal
biog3_v1.0_unigene22293 biogeco3 v1.0 342
• AutoFact: zinc finger (MYND type) family protein / F-box family protein [Arabidopsis thaliana] sp|Q9FYF9.1|FB76_ARATH RecName: Full=F-box protein At1g67340 gb|AAG00241.1|AC002130_6 F1N21.16 [Arabidopsis thaliana] gb|AAL14418.1| At1g67340/F1N21_16 [Arabidopsis thali 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: f-box protein at1g67340-like 0.0
Internal
biog3_v1.0_unigene22307 biogeco3 v1.0 118
• AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SCL9_RICCO 1.0e-18
• Blast2go: acyl- n-acyltransferase with ring fyve phd-type zinc finger domain-containing protein 2.17577e-19
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain