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Assembly Name: biogeco3 v1.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene19883 biogeco3 v1.0 255
AutoFact: perakine reductase [Rauvolfia serpentina] 0.0
Blast2go: aldo keto 0.0
unknown
biog3_v1.0_unigene19910 biogeco3 v1.0 250
AutoFact: [L] COG4581 Superfamily II RNA helicase 1.96182e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: superkiller viralicidic activity 2-like 2-like 0.0
Internal
biog3_v1.0_unigene19912 biogeco3 v1.0 128
AutoFact: MADS-box transcription factor GbMADS3 n=1 Tax=Ginkgo biloba RepID=Q58A80_GINBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mads-box transcription factor 3 0.0
Internal
biog3_v1.0_unigene19920 biogeco3 v1.0 320
AutoFact: R2r3-myb transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SHV5_RICCO 0.0
Blast2go: transcription factor gamyb-like 0.0
unknown
biog3_v1.0_unigene19947 biogeco3 v1.0 308
AutoFact: [R] COG2319 FOG: WD40 repeat 8.0e-09
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein topless 0.0
Internal
biog3_v1.0_unigene19952 biogeco3 v1.0 192
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDJ8_RICCO 0.0
FL-Next: sp=Flap endonuclease GEN-like 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: 5 -3 exonuclease-like protein 0.0
Internal
biog3_v1.0_unigene19958 biogeco3 v1.0 278
AutoFact: splicing factor 3B subunit 3 [Arabidopsis thaliana] ref|NP_567016.1| putative splicing factor [Arabidopsis thaliana] emb|CAB75754.1| spliceosomal-like protein [Arabidopsis thaliana] emb|CAB75756.1| spliceosomal-like protein [Arabidopsis thaliana] gb|AEE79 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene19959 biogeco3 v1.0 254
AutoFact: Histone acetyltransferase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RAZ9_PHYPA 0.0
Blast2go: histone acetyltransferase 0.0
Putative coding
biog3_v1.0_unigene20010 biogeco3 v1.0 200
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna topoisomerase ii 0.0
N-terminus
biog3_v1.0_unigene20018 biogeco3 v1.0 298
AutoFact: cyclin H-1 [Oryza sativa Japonica Group] 0.0
Blast2go: cyclin h-1 0.0
unknown
biog3_v1.0_unigene20023 biogeco3 v1.0 443
AutoFact: uridylate kinase [Arabidopsis thaliana] dbj|BAB01794.1| unnamed protein product [Arabidopsis thaliana] gb|AAK92763.1| putative uridylate kinase [Arabidopsis thaliana] gb|AAM14100.1| putative uridylate kinase [Arabidopsis thaliana] gb|AEE76131.1| uridylate 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uridylate kinase 0.0
Internal
biog3_v1.0_unigene20032 biogeco3 v1.0 318
AutoFact: DNA ligase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TSX4_VITVI 0.0
FL-Next: sp=DNA ligase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna ligase 0.0
Internal
biog3_v1.0_unigene20047 biogeco3 v1.0 297
AutoFact: Contains similarity to ubiquitin carboxyl-terminal hydrolase 14 gb|Z35927 from S. cerevisiae [Arabidopsis thaliana] 0.0
FL-Next: sp=E3 ubiquitin-protein ligase UPL2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ubiquitin-protein ligase 1 0.0
Internal
biog3_v1.0_unigene20078 biogeco3 v1.0 304
AutoFact: RecName: Full=Cyclin-T1-3; Short=CycT1;3 gb|AAX92940.1| Cyclin, N-terminal domain, putative [Oryza sativa Japonica Group] gb|EEC67709.1| hypothetical protein OsI_35185 [Oryza sativa Indica Group] 0.0
Blast2go: cyclin-t1-5-like isoform 1 0.0
unknown
biog3_v1.0_unigene20085 biogeco3 v1.0 303
AutoFact: Helix-loop-helix DNA-binding [Medicago truncatula] 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: phytochrome-interacting factor 0.0
Internal
biog3_v1.0_unigene20102 biogeco3 v1.0 204
AutoFact: Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9SYY2_RICCO 0.0
Blast2go: microtubule-associated protein map65-1a 0.0
unknown
biog3_v1.0_unigene20137 biogeco3 v1.0 399
AutoFact: [K] COG5190 TFIIF-interacting CTD phosphatases, including NLI-interacting factor 2.0e-07
FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii c-terminal domain phosphatase-like 3-like 0.0
Internal
biog3_v1.0_unigene20150 biogeco3 v1.0 377
AutoFact: RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana] dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana] gb|AAK96804.1| Unknown prot 7.0e-35
Blast2go: rna recognition motif family expressed 0.0
unknown
biog3_v1.0_unigene20161 biogeco3 v1.0 310
AutoFact: Multidrug/pheromone exporter, MDR family, ABC transporter family n=3 Tax=Malpighiales RepID=B9HM46_POPTR 1.99965e-42
Blast2go: abc transporter b family member 20-like 0.0
Putative coding
biog3_v1.0_unigene20173 biogeco3 v1.0 293
AutoFact: Global transcription factor group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I6M9_POPTR 0.0
FL-Next: sp=FACT complex subunit SPT16; Zea mays (Maize). 0.0
Blast2go: global transcription factor group 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain