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Assembly Name: biogeco3 v1.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene647 biogeco3 v1.0 518
AutoFact: pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: smc3 protein 0.0
Putative C-terminus
biog3_v1.0_unigene676 biogeco3 v1.0 641
AutoFact: TPLATE protein [Arabidopsis thaliana] gb|AEE73713.1| TPLATE protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: tplate protein 0.0
Internal
biog3_v1.0_unigene698 biogeco3 v1.0 168
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9T0X5_RICCO 0.0
Blast2go: dead-box atp-dependent rna helicase 29-like 0.0
unknown
biog3_v1.0_unigene700 biogeco3 v1.0 477
AutoFact: LHY homologue1 [Lemna paucicostata] 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: late elongated hypocotyl-like protein 0.0
Internal
biog3_v1.0_unigene725 biogeco3 v1.0 633
AutoFact: Nucleosome assembly protein family n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TVZ4_PHYPA 0.0
FL-Next: tr=Nucleosome assembly protein family; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: nucleosome assembly protein 1 2 0.0
N-terminus
biog3_v1.0_unigene727 biogeco3 v1.0 276
AutoFact: DNA polymerase delta p66 subunit-like n=2 Tax=Oryza sativa RepID=Q5QNL2_ORYSJ 4.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna polymerase delta subunit 0.0
Internal
biog3_v1.0_unigene739 biogeco3 v1.0 377
AutoFact: Fructokinase-like protein 1 n=1 Tax=Solanum tuberosum RepID=D9IWP2_SOLTU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: fructokinase-like protein 1 0.0
Internal
biog3_v1.0_unigene753 biogeco3 v1.0 708
AutoFact: actin-related protein C1B [Arabidopsis thaliana] gb|AAL27513.1|AF439845_1 At2g31300/F16D14.14 [Arabidopsis thaliana] gb|AAD20675.1| putative ARP2/3 protein complex subunit p41 [Arabidopsis thaliana] gb|AAN18136.1| At2g31300/F16D14.14 [Arabidopsis thaliana 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: actin-related protein c1a 0.0
N-terminus
biog3_v1.0_unigene769 biogeco3 v1.0 897
AutoFact: Myb transcription factor [Vitis vinifera] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene820 biogeco3 v1.0 430
AutoFact: structural maintenance of chromosomes 1 protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: structural maintenance of chromosomes 1 0.0
Internal
biog3_v1.0_unigene845 biogeco3 v1.0 1082
AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ricinus communis RepID=B9SWA7_RICCO 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ubiquitin carboxyl-terminal hydrolase 5-like 0.0
Internal
biog3_v1.0_unigene869 biogeco3 v1.0 415
AutoFact: structural maintenance of chromosomes (SMC) - like protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: structural maintenance of chromosomes 1 0.0
Internal
biog3_v1.0_unigene874 biogeco3 v1.0 1312
AutoFact: Ccaat-binding transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RHZ1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ccaat-binding transcription 0.0
Complete
biog3_v1.0_unigene890 biogeco3 v1.0 694
AutoFact: Homeobox 1 n=1 Tax=Picea abies RepID=Q9FR59_PICAB 0.0
FL-Next: tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: homeobox-leucine zipper protein hdg2-like 0.0
C-terminus
biog3_v1.0_unigene895 biogeco3 v1.0 1357
AutoFact: putative growth-regulating factor 6 [Zea mays] gb|ABQ01219.1| putative growth-regulating factor 6 [Zea mays] 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: growth-regulating factor 6 0.0
N-terminus
biog3_v1.0_unigene927 biogeco3 v1.0 288
AutoFact: Cytochrom_C_asm domain containing protein 0.0001
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
Internal
biog3_v1.0_unigene961 biogeco3 v1.0 346
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] gb|AED97925.1| O-fucosyltransferase family protein [Arabidopsis thaliana] 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
Internal
biog3_v1.0_unigene985 biogeco3 v1.0 299
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RJU4_RICCO 7.0e-08
Blast2go: conserved peptide upstream open reading frame 37 0.0
unknown
biog3_v1.0_unigene989 biogeco3 v1.0 457
AutoFact: putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] 0.0
FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna-dependent rna polymerase 6 0.0
Internal
biog3_v1.0_unigene1000 biogeco3 v1.0 1166
AutoFact: Clathrin assembly protein, putative n=1 Tax=Ricinus communis RepID=B9RP36_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: clathrin assembly protein 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain