Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene4026 biogeco3 v1.0 395
AutoFact: RNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9T403_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna-binding protein 5 10 0.0
Internal
biog3_v1.0_unigene4029 biogeco3 v1.0 542
AutoFact: pfam00400, WD40, WD domain, G-beta repeat 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional corepressor leunig 0.0
Internal
biog3_v1.0_unigene4036 biogeco3 v1.0 354
AutoFact: pfkB-type carbohydrate kinase-like protein [Arabidopsis thaliana] gb|AAK32830.1|AF361817_1 At1g06730/F4H5_22 [Arabidopsis thaliana] gb|AEE28029.1| pfkB-type carbohydrate kinase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Ribokinase, putative; Ricinus communis (Castor bean). 0.0
Blast2go: pfkb-type carbohydrate kinase family protein 0.0
Internal
biog3_v1.0_unigene4038 biogeco3 v1.0 1399
AutoFact: pfam05920, Homeobox_KN, Homeobox KN domain 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: homeobox protein knotted-1-like 3 0.0
C-terminus
biog3_v1.0_unigene4056 biogeco3 v1.0 489
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: c2-h2 zinc finger protein 0.0
Internal
biog3_v1.0_unigene4057 biogeco3 v1.0 1547
AutoFact: minichromosomal maintenance factor [Triticum aestivum] 0.0
FL-Next: sp=DNA replication licensing factor MCM3 homolog 1; Zea mays (Maize). 0.0
Blast2go: minichromosome maintenance protein 2 0.0
Putative C-terminus
biog3_v1.0_unigene4070 biogeco3 v1.0 592
AutoFact: Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8V3_RICCO 0.0
FL-Next: sp=Squamosa promoter-binding-like protein 14; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: squamosa promoter-binding-like protein 14-like 0.0
Internal
biog3_v1.0_unigene4079 biogeco3 v1.0 705
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh113-like 0.0
C-terminus
biog3_v1.0_unigene4086 biogeco3 v1.0 437
AutoFact: Bet1-like SNARE 1-1 [Arabidopsis thaliana] sp|Q9M2J9.1|BET11_ARATH RecName: Full=Bet1-like SNARE 1-1; Short=AtBET11; AltName: Full=Bet1/Sft1-like SNARE 14a; Short=AtBS14a gb|AAK52976.1|AF368175_1 Bet1/Sft1-like SNARE AtBS14a [Arabidopsis thaliana] emb|CAB 8.00141e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bet1-like snare 1-1 0.0
Putative N-terminus
biog3_v1.0_unigene4166 biogeco3 v1.0 1497
AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJS4_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor ilr3 0.0
Complete
biog3_v1.0_unigene4176 biogeco3 v1.0 388
AutoFact: protein tonneau 2 [Arabidopsis thaliana] gb|AAG35778.1|AF280057_1 tonneau 2 [Arabidopsis thaliana] gb|AAG35792.1|AF290025_1 tonneau 2 [Arabidopsis thaliana] gb|AAK26026.1|AF360316_1 unknown protein [Arabidopsis thaliana] gb|AAM44936.1| unknown protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: phosphatase subunit g4-1 0.0
Internal
biog3_v1.0_unigene4178 biogeco3 v1.0 397
AutoFact: adenosine kinase [Arabidopsis thaliana] sp|Q9ZUU1.1|KADC1_ARATH RecName: Full=Probable adenylate kinase 1, chloroplastic; Short=AK 1; AltName: Full=ATP-AMP transphosphorylase 1; Flags: Precursor gb|AAC98046.1| putative adenylate kinase [Arabidopsis thalia 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: adenylate kinase 0.0
C-terminus
biog3_v1.0_unigene4179 biogeco3 v1.0 337
AutoFact: Unassigned protein
FL-Next: sp=NF-X1-type zinc finger protein NFXL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: nf-x1-type zinc finger protein nfxl1-like 0.0
Internal
biog3_v1.0_unigene4207 biogeco3 v1.0 687
AutoFact: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RD12_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein arabidillo 1-like 0.0
N-terminus
biog3_v1.0_unigene4224 biogeco3 v1.0 620
AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Selaginella moellendorffii RepID=D8S7A6_SELML 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene4230 biogeco3 v1.0 705
AutoFact: Helix-loop-helix DNA-binding n=2 Tax=Medicago truncatula RepID=Q2HVX8_MEDTR 0.0
FL-Next: sp=Uncharacterized basic helix-loop-helix protein At1g06150; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene4310 biogeco3 v1.0 987
AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 small nuclear ribonucleoprotein-70k 0.0
N-terminus
biog3_v1.0_unigene4315 biogeco3 v1.0 1124
AutoFact: splicing factor 3B subunit 3 [Arabidopsis thaliana] ref|NP_567016.1| putative splicing factor [Arabidopsis thaliana] emb|CAB75754.1| spliceosomal-like protein [Arabidopsis thaliana] emb|CAB75756.1| spliceosomal-like protein [Arabidopsis thaliana] gb|AEE79 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog3_v1.0_unigene4335 biogeco3 v1.0 1677
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u2 snrnp auxiliary small 0.0
Complete
biog3_v1.0_unigene4369 biogeco3 v1.0 229
AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna mismatch repair protein 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain