Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene8430 biogeco3 v1.0 272
• AutoFact: phantastica-like MYB protein [Eschscholzia californica subsp. californica] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: asymmetric leaves1 and rough 0.0
C-terminus
biog3_v1.0_unigene8450 biogeco3 v1.0 238
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: snf2 family dna-dependent atpase 7.98353e-28
Internal
biog3_v1.0_unigene8495 biogeco3 v1.0 1413
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SGW9_RICCO 9.80909e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: two-component response regulator ehd1 0.0
Complete
biog3_v1.0_unigene8507 biogeco3 v1.0 288
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SLJ7_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene8549 biogeco3 v1.0 219
• AutoFact: Unassigned protein
• Blast2go: uncharacterized protein 0.0
unknown
biog3_v1.0_unigene8605 biogeco3 v1.0 170
• AutoFact: [R] COG0613 Predicted metal-dependent phosphoesterases (PHP family) 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein trph-like 0.0
Internal
biog3_v1.0_unigene8633 biogeco3 v1.0 281
• AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
• FL-Next: tr=Os05g0235800 protein; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: minichromosome maintenance protein 0.0
N-terminus
biog3_v1.0_unigene8721 biogeco3 v1.0 239
• AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 3.0e-30
• FL-Next: sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris). 0.0
• Blast2go: fact complex subunit ssrp1 1.27339e-34
C-terminus
biog3_v1.0_unigene8730 biogeco3 v1.0 615
• AutoFact: putative helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna helicase ino80-like 0.0
Complete
biog3_v1.0_unigene8747 biogeco3 v1.0 253
• AutoFact: ADP-ribosylation factor 3 n=21 Tax=Magnoliophyta RepID=ARF3_ARATH 0.0
• Blast2go: adp-ribosylation factor 3 0.0
unknown
biog3_v1.0_unigene8862 biogeco3 v1.0 392
• AutoFact: myb family transcription factor [Brassica oleracea] 0.0
• Blast2go: protein 0.0
unknown
biog3_v1.0_unigene9014 biogeco3 v1.0 337
• AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
• Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
unknown
biog3_v1.0_unigene9043 biogeco3 v1.0 397
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SR79_RICCO 1.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: kanadi like transcription factor 6.16344e-36
Internal
biog3_v1.0_unigene9052 biogeco3 v1.0 569
• AutoFact: transcriptional activator DEMETER [Arabidopsis thaliana] sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA glycosylase-related protein DME gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana] gb|AED90761.1| 2.0e-34
• FL-Next: Isoform 1 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
• Blast2go: transcriptional activator demeter-like 4.09832e-39
Internal
biog3_v1.0_unigene9140 biogeco3 v1.0 220
• AutoFact: Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens RepID=E1C9M6_PHYPA 0.0
• Blast2go: rna sigma 70 subfamily 0.0
unknown
biog3_v1.0_unigene9194 biogeco3 v1.0 580
• AutoFact: DNA polymerase delta subunit 2 [Arabidopsis thaliana] sp|O48520.2|DPOD2_ARATH RecName: Full=DNA polymerase delta small subunit gb|AAM97084.1| putative DNA polymerase delta small subunit [Arabidopsis thaliana] gb|AAP49515.1| At2g42120 [Arabidopsis thaliana 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna polymerase delta subunit 2 0.0
Internal
biog3_v1.0_unigene9216 biogeco3 v1.0 856
• AutoFact: transcription factor DcMYB3-1 [Daucus carota] 5.04467e-44
• FL-Next: sp=Transcription factor MYB3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: transcription factor tt2-like 0.0
Complete
biog3_v1.0_unigene9267 biogeco3 v1.0 510
• AutoFact: Histone acetyltransferase gcn5, putative n=1 Tax=Ricinus communis RepID=B9S4R6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone acetyltransferase 0.0
Internal
biog3_v1.0_unigene9292 biogeco3 v1.0 809
• AutoFact: Alba multi-domain protein 3.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
biog3_v1.0_unigene9359 biogeco3 v1.0 652
• AutoFact: Pseudo response regulator n=1 Tax=Selaginella moellendorffii RepID=D8T4E0_SELML 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pseudo response regulator 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain