Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: biogeco3 v1.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene7641 biogeco3 v1.0 1408
• AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
C-terminus
biog3_v1.0_unigene7648 biogeco3 v1.0 252
• AutoFact: perakine reductase [Rauvolfia serpentina] 0.0
• Blast2go: aldo keto 0.0
unknown
biog3_v1.0_unigene7696 biogeco3 v1.0 837
• AutoFact: DOF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIX8_MALDO 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: f-box family protein 2.8026e-45
N-terminus
biog3_v1.0_unigene7719 biogeco3 v1.0 541
• AutoFact: Similarity to ribonuclease III n=1 Tax=Cryptomeria japonica RepID=Q1XG54_CRYJA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ribonuclease iii 0.0
N-terminus
biog3_v1.0_unigene7778 biogeco3 v1.0 234
• AutoFact: Os01g0958100 protein (Fragment) n=1 Tax=Oryza sativa Japonica Group RepID=Q0JFW3_ORYSJ 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: fused signal recognition particle receptor 2.54994e-41
N-terminus
biog3_v1.0_unigene7798 biogeco3 v1.0 368
• AutoFact: genomes uncoupled 1 protein [Arabidopsis thaliana] sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Flags: Precursor gb|AAD26479.1| unknown protein [Arabidopsis thaliana] gb|AEC08542.1| genomes un 0.0
• FL-Next: sp=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
biog3_v1.0_unigene7876 biogeco3 v1.0 417
• AutoFact: AP2 domain-containing transcription factor 7 n=1 Tax=Glycine max RepID=C9WA65_SOYBN 2.0e-31
• Blast2go: dehydration responsive element binding protein 7.17662e-34
Putative coding
biog3_v1.0_unigene7896 biogeco3 v1.0 748
• AutoFact: pfam08755, YccV-like, Hemimethylated DNA-binding protein YccV like 5.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uvrb uvrc motif-containing protein 0.0
C-terminus
biog3_v1.0_unigene7928 biogeco3 v1.0 469
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SC24_RICCO 0.0
• Blast2go: protein 0.0
Putative coding
biog3_v1.0_unigene7984 biogeco3 v1.0 385
• AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
• FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog3_v1.0_unigene8033 biogeco3 v1.0 302
• AutoFact: phantastica-like MYB protein [Eschscholzia californica subsp. californica] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: asymmetric leaves1 and rough 0.0
Internal
biog3_v1.0_unigene8056 biogeco3 v1.0 1291
• AutoFact: Zn finger protein [Nicotiana tabacum] 2.0e-33
• Blast2go: f-box family protein 3.1703e-41
Coding
biog3_v1.0_unigene8087 biogeco3 v1.0 545
• AutoFact: transcription factor bHLH30 [Arabidopsis thaliana] sp|Q9S7Y1.1|BH030_ARATH RecName: Full=Transcription factor bHLH30; AltName: Full=Basic helix-loop-helix protein 30; Short=AtbHLH30; Short=bHLH 30; AltName: Full=Transcription factor EN 53; AltName: Full=b 3.99931e-42
• Blast2go: transcription factor bhlh30 0.0
unknown
biog3_v1.0_unigene8125 biogeco3 v1.0 295
• AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor bhlh62-like 0.0
Internal
biog3_v1.0_unigene8272 biogeco3 v1.0 306
• AutoFact: sirtuin 1 [Arabidopsis thaliana] gb|AAG44850.1|AF283757_1 sir2-like protein [Arabidopsis thaliana] dbj|BAB09243.1| transcription regulator Sir2-like protein [Arabidopsis thaliana] gb|AED96677.1| sirtuin 1 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: sirtuin 1 0.0
Internal
biog3_v1.0_unigene8294 biogeco3 v1.0 1180
• AutoFact: DNA repair protein xp-E, putative n=1 Tax=Ricinus communis RepID=B9SKT9_RICCO 0.0
• FL-Next: sp=DNA damage-binding protein 1; cheesmanii). 0.0
• Blast2go: dna damage-binding protein 1a 0.0
Internal
biog3_v1.0_unigene8344 biogeco3 v1.0 704
• AutoFact: RNA polymerase II transcriptional coactivator KIWI n=4 Tax=Arabidopsis RepID=KIWI_ARATH 9.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna polymerase ii transcriptional coactivator kiwi 0.0
Putative Complete
biog3_v1.0_unigene8389 biogeco3 v1.0 347
• AutoFact: TATA binding protein associated factor n=1 Tax=Solanum tuberosum RepID=Q3LHL0_SOLTU 7.0e-37
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: transcription initiation factor tfiid subunit a 4.14924e-42
Internal
biog3_v1.0_unigene8392 biogeco3 v1.0 311
• AutoFact: AP2-related transcription factor AP2L3 (Fragment) n=2 Tax=Picea RepID=Q106U2_PICAB 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: apetala2-like protein 0.0
N-terminus
biog3_v1.0_unigene8419 biogeco3 v1.0 366
• AutoFact: histone-lysine N-methyltransferase CLF [Arabidopsis thaliana] sp|P93831.2|CLF_ARATH RecName: Full=Histone-lysine N-methyltransferase CLF; AltName: Full=Polycomb group protein CURLY LEAF; AltName: Full=Protein INCURVATA 1; AltName: Full=Protein SET DOMAIN 0.0
• FL-Next: sp=Histone-lysine N-methyltransferase CLF; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: polycomb protein ez1 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain