Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene6969 biogeco3 v1.0 354
AutoFact: Endonuclease III, putative n=1 Tax=Ricinus communis RepID=B9T798_RICCO 1.4013e-45
FL-Next: tr=Endonuclease III, putative; Ricinus communis (Castor bean). 0.0
Blast2go: endonuclease iii 0.0
Internal
biog3_v1.0_unigene6987 biogeco3 v1.0 271
AutoFact: myb family transcription factor [Brassica oleracea] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene7004 biogeco3 v1.0 585
AutoFact: R2R3-MYB transcription factor MYB5 n=1 Tax=Picea glauca RepID=A5JYE9_PICGL 0.0
FL-Next: tr=R2R3-MYB transcription factor MYB5; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: myb-like protein 0.0
Putative C-terminus
biog3_v1.0_unigene7019 biogeco3 v1.0 542
AutoFact: pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain 1.0e-05
Blast2go: telomeric repeat-binding factor 8.75652e-34
Coding
biog3_v1.0_unigene7062 biogeco3 v1.0 741
AutoFact: Putative auxin response factor 10/16/17 (Fragment) n=1 Tax=Cycas rumphii RepID=E1UHY1_CYCRU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: auxin response factor 18-like 0.0
Putative N-terminus
biog3_v1.0_unigene7067 biogeco3 v1.0 433
AutoFact: Histone H3 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U534_PHYPA 2.0e-24
FL-Next: tr=Histone 3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: cenh3 1.87561e-29
C-terminus
biog3_v1.0_unigene7169 biogeco3 v1.0 886
AutoFact: Arf gtpase-activating protein, putative n=1 Tax=Ricinus communis RepID=B9SNV8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable adp-ribosylation factor gtpase-activating protein agd8-like 0.0
Internal
biog3_v1.0_unigene7250 biogeco3 v1.0 414
AutoFact: Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 0.0
Internal
biog3_v1.0_unigene7292 biogeco3 v1.0 283
AutoFact: histone-lysine N-methyltransferase CLF [Arabidopsis thaliana] sp|P93831.2|CLF_ARATH RecName: Full=Histone-lysine N-methyltransferase CLF; AltName: Full=Polycomb group protein CURLY LEAF; AltName: Full=Protein INCURVATA 1; AltName: Full=Protein SET DOMAIN 0.0
FL-Next: sp=Histone-lysine N-methyltransferase EZ2; Zea mays (Maize). 0.0
Blast2go: polycomb protein ez1 0.0
C-terminus
biog3_v1.0_unigene7317 biogeco3 v1.0 682
AutoFact: DNA polymerase n=1 Tax=Ricinus communis RepID=B9SC90_RICCO 0.0
FL-Next: sp=DNA polymerase alpha catalytic subunit; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna polymerase alpha catalytic 0.0
C-terminus
biog3_v1.0_unigene7324 biogeco3 v1.0 823
AutoFact: transcription factor bHLH30 [Arabidopsis thaliana] sp|Q9S7Y1.1|BH030_ARATH RecName: Full=Transcription factor bHLH30; AltName: Full=Basic helix-loop-helix protein 30; Short=AtbHLH30; Short=bHLH 30; AltName: Full=Transcription factor EN 53; AltName: Full=b 3.99931e-42
FL-Next: sp=Transcription factor bHLH30; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: transcription factor bhlh30 0.0
Putative N-terminus
biog3_v1.0_unigene7352 biogeco3 v1.0 430
AutoFact: protein DP-E2F-like 1 [Arabidopsis thaliana] emb|CAD10633.1| transcription factor E2Fe [Arabidopsis thaliana] gb|AEE78374.1| protein DP-E2F-like 1 [Arabidopsis thaliana] 2.0e-34
FL-Next: Isoform 2 of E2F transcription factor-like E2FE OS=Arabidopsis thaliana GN=E2FE 0.0
Blast2go: antagonist of e2f-dp complex 0.0
Internal
biog3_v1.0_unigene7368 biogeco3 v1.0 1105
AutoFact: PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] dbj|BAD95354.1| receptor like protein [Arabidopsis thaliana] gb|AEE84563.1| PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ebs-bah-phd domain-containing protein 0.0
Putative Complete
biog3_v1.0_unigene7383 biogeco3 v1.0 518
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RCQ0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: high mobility group family 0.0
Internal
biog3_v1.0_unigene7407 biogeco3 v1.0 573
AutoFact: uncharacterized protein [Arabidopsis thaliana] dbj|BAB09821.1| unnamed protein product [Arabidopsis thaliana] gb|AAM78111.1| AT5g23040/MYJ24_3 [Arabidopsis thaliana] gb|AAN28774.1| At5g23040/MYJ24_3 [Arabidopsis thaliana] dbj|BAD95465.1| cell growth defec 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene7418 biogeco3 v1.0 374
AutoFact: human Mi-2 autoantigen-like protein [Arabidopsis thaliana] dbj|BAB08833.1| helicase-like protein [Arabidopsis thaliana] 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 3.53322e-32
Putative N-terminus
biog3_v1.0_unigene7513 biogeco3 v1.0 246
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclease harbi1-like 0.0
Internal
biog3_v1.0_unigene7531 biogeco3 v1.0 408
AutoFact: Ethylene transcription factor n=2 Tax=Fagus sylvatica RepID=Q70AB2_FAGSY 6.0e-19
Blast2go: ap2 domain containing protein 2.25605e-23
Coding
biog3_v1.0_unigene7545 biogeco3 v1.0 438
AutoFact: Zinc finger-homeodomain protein 2 n=1 Tax=Saruma henryi RepID=B0LK13_SARHE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene7577 biogeco3 v1.0 435
AutoFact: transcription factor, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: two-component response regulator arr 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain