Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene13429 biogeco3 v1.0 551
AutoFact: endoribonuclease/protein kinase IRE1-like protein [Arabidopsis thaliana] gb|AAK15470.1|AF308596_1 endoribonuclease/protein kinase IRE1-like protein [Arabidopsis thaliana] dbj|BAB63367.1| Ire1 homolog-2 [Arabidopsis thaliana] gb|AAD32909.2| putative protei 1.0e-29
Blast2go: endoribonuclease protein kinase ire1 8.54202e-37
unknown
biog3_v1.0_unigene14067 biogeco3 v1.0 386
AutoFact: serine/threonine-protein kinase AFC2 [Arabidopsis thaliana] sp|P51567.1|AFC2_ARATH RecName: Full=Serine/threonine-protein kinase AFC2 gb|AAA57118.1| protein kinase [Arabidopsis thaliana] dbj|BAA08214.1| protein kinase [Arabidopsis thaliana] emb|CAA22989.1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene14109 biogeco3 v1.0 506
AutoFact: CLP-like protein 3 [Arabidopsis thaliana] ref|NP_974220.1| CLP-like protein 3 [Arabidopsis thaliana] gb|AAF04897.1|AC011437_12 unknown protein [Arabidopsis thaliana] gb|AAL32944.1| Unknown protein [Arabidopsis thaliana] gb|AAM91151.1| unknown protein [Ara 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein clp1 homolog 0.0
Internal
biog3_v1.0_unigene14200 biogeco3 v1.0 214
AutoFact: Unassigned protein
Blast2go: protein rrp5 homolog 0.0
unknown
biog3_v1.0_unigene14294 biogeco3 v1.0 239
AutoFact: Type II intron maturase family protein n=4 Tax=Andropogoneae RepID=B6SWF1_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized mitochondrial protein ymf11-like 0.0
Internal
biog3_v1.0_unigene14556 biogeco3 v1.0 267
AutoFact: serine/threonine-protein kinase AFC2 [Arabidopsis thaliana] sp|P51567.1|AFC2_ARATH RecName: Full=Serine/threonine-protein kinase AFC2 gb|AAA57118.1| protein kinase [Arabidopsis thaliana] dbj|BAA08214.1| protein kinase [Arabidopsis thaliana] emb|CAA22989.1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
biog3_v1.0_unigene14660 biogeco3 v1.0 329
AutoFact: splicing factor 3B subunit 5 [Arabidopsis thaliana] sp|P58728.1|SF3BB_ARATH RecName: Full=Uncharacterized protein At4g14342 gb|AAL36377.1| unknown protein [Arabidopsis thaliana] gb|AAM67534.1| unknown protein [Arabidopsis thaliana] dbj|BAC43291.1| unknown 8.99634e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 5 0.0
Complete
biog3_v1.0_unigene15130 biogeco3 v1.0 297
AutoFact: Nuclear pre-mRNA splicing factor, component of splicing factor 3b (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8JHC1_CHLRE 0.0
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Blast2go: splicing factor 3b subunit 0.0
Internal
biog3_v1.0_unigene15743 biogeco3 v1.0 134
AutoFact: Unassigned protein
Blast2go: unknown [Picea sitchensis] 5.60265e-11
unknown
biog3_v1.0_unigene17754 biogeco3 v1.0 211
AutoFact: [R] COG2319 FOG: WD40 repeat 0.0
FL-Next: sp=Flowering time control protein FY; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: flowering time control protein fy 0.0
Internal
biog3_v1.0_unigene17819 biogeco3 v1.0 243
AutoFact: Ferrochelatase n=1 Tax=Nicotiana tabacum RepID=Q949G2_TOBAC 0.0
FL-Next: sp=Ferrochelatase-2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ferrochelatase- chloroplastic-like 0.0
Internal
biog3_v1.0_unigene18093 biogeco3 v1.0 229
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein rrp5 homolog 0.0
Internal
biog3_v1.0_unigene19124 biogeco3 v1.0 238
AutoFact: CLP-like protein 3 [Arabidopsis thaliana] ref|NP_974220.1| CLP-like protein 3 [Arabidopsis thaliana] gb|AAF04897.1|AC011437_12 unknown protein [Arabidopsis thaliana] gb|AAL32944.1| Unknown protein [Arabidopsis thaliana] gb|AAM91151.1| unknown protein [Ara 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein clp1 homolog 0.0
Internal
biog3_v1.0_unigene19243 biogeco3 v1.0 199
AutoFact: [R] COG2319 FOG: WD40 repeat 0.0
FL-Next: sp=Flowering time control protein FY; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: flowering time control protein fy 0.0
Internal
biog3_v1.0_unigene19535 biogeco3 v1.0 172
AutoFact: Nuclear pre-mRNA splicing factor, component of splicing factor 3b (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8JHC1_CHLRE 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: splicing factor 3b subunit 0.0
Internal
biog3_v1.0_unigene20023 biogeco3 v1.0 443
AutoFact: uridylate kinase [Arabidopsis thaliana] dbj|BAB01794.1| unnamed protein product [Arabidopsis thaliana] gb|AAK92763.1| putative uridylate kinase [Arabidopsis thaliana] gb|AAM14100.1| putative uridylate kinase [Arabidopsis thaliana] gb|AEE76131.1| uridylate 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uridylate kinase 0.0
Internal
biog3_v1.0_unigene20464 biogeco3 v1.0 201
AutoFact: uridylate kinase [Arabidopsis thaliana] dbj|BAB01794.1| unnamed protein product [Arabidopsis thaliana] gb|AAK92763.1| putative uridylate kinase [Arabidopsis thaliana] gb|AAM14100.1| putative uridylate kinase [Arabidopsis thaliana] gb|AEE76131.1| uridylate 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uridylate kinase 0.0
Internal
biog3_v1.0_unigene20667 biogeco3 v1.0 471
AutoFact: Intron maturase, type II family protein [Arabidopsis thaliana] dbj|BAB10231.1| unnamed protein product [Arabidopsis thaliana] gb|AED95448.1| Intron maturase, type II family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized mitochondrial protein ymf11-like 0.0
Internal
biog3_v1.0_unigene20773 biogeco3 v1.0 328
AutoFact: putative receptor-like protein kinase [Arabidopsis thaliana] 4.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lrr receptor-like serine threonine-protein kinase fei 0.0
C-terminus
biog3_v1.0_unigene21469 biogeco3 v1.0 310
AutoFact: cell cycle control crn (crooked neck) protein-like [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: pre-mrna-splicing factor clf1 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain