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Welcome to Isochrysis DB

IsochrysisDB is a transcriptome database for T-iso (Isochrysis galbana). This database includes the assemblies and annotation of new genomic resources generated from different tissues, developmental stages or stimuli treatments using NGS technologies. The information here provided represents a valuable information resource to boost research and aquaculture of these sole species. This database will be updated periodically with new transcriptomic information from NGS. Moreover, further studies for genome analysis and SNPs identification are ongoing.

Portada_isochrysis

Contact: Mmmail

Web interface: V1.2

Current Release:

Isochrysisdb DB v.1.0 2013-12-16

Software:
- SeqTrimNext 2.0.54
- BLAST+ v2.2.28
- AutoFact v3.4 customised
- Full-LengtherNext
- Sma3 v2.1
- Bowtie 2 v2.0.0-beta7
- Samtools v0.1.19
- mreps v2.5


HOW TO CITE
isochrysisDB: a database for Isochrysis sp genomic resources. Manuscript in preparation.

FUNDING SUPPORT




Juntadeandalucia

IFAPA Centro El Toruño. Ctra. N. IV Km. 654a. Camino de Tiro Pichón. El Puerto de Santa María (Cádiz), Spain.
Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29590 Campanillas (Málaga), Spain